Gene Information

Name : Trad_0769 (Trad_0769)
Accession : YP_003704447.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 838300 - 839250 bp
Length : 951 bp
Strand : +
Note : COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: aeh:Mlg_1043 ABC-3 protein; PFAM: ABC-3 protein; SPTR: Q0A9U1 ABC-3 protein; PFAM: ABC 3 transport family

DNA sequence : 
GTGAGGGAGCTTTACGGGGCGCTCTACGGCGCCGCAGAAGGGGTCGCGGAGGCGCTCATCGCCGCGCTCGTGGTGCTCTT
GAACCTTCTGCCGGCGCCGCTGGCCGAACCCTTTCAGTACGGCTTTATGCAGCGCGCGCTGCTCACCACACTGGTCGTCG
GGGCGGTCTGCGGGGTGCTCTCGTGCTTTGTGGTGCTGCGCCGCTGGGCCCTTTTGGGCGACGCCATCTCGCACGCGGTC
TTGCCGGGGGTAGCGGTCGCCTACTTGCTGGCTTGGCCCTACTTCGTCGGGGCCTTTGTAACCGGCGCGCTGACGGCGCT
CGGCATCGGCTTTATCGAGCGCCACACCCGGATCAAAGAGGACACCGCCATGGGGCTCATGTTTACCGGCGCCTTCGCCC
TCGGGGTGGTGATGATTAGCCGCATCGCCACCGCGACGCACCTCATGCACATCCTTTTCGGCAACGTTCTCGGGGTGCGC
ATGCCGGTGCTTCTGCTCACCCTGCTGGCGGGCGCCGCGACGCTGCTCGCCGTGTTTCTTTTCTACAAAGAGCTGTCGCT
CTACATCTTCGACCCCACCCAAGCGAGCGCCGTGGGGATCAACACCGCCGCCGTCCACTACGGTCTGATGCTGCTCCTGA
CCCTGACGATCGTCGCGAGCCTCGAGACGGTCGGCGTCATCTTGGTCGTGGCGATGCTGATCACGCCGGGGGCGACCGCT
TACCTGCTCAGCAACAACCTGCCGCGCATGATGCTCCTGGCCGCCGGGGTCGGTATGGTTTCGGGGGTCGTCGGCCTCTA
CCTGTCGTTTTACCTCAACGTCGCCTCGGGGGGGACGATCGTCCTCGTCGCGAGCGGCCTTTTTGTGCTGGCACTTATCT
TCGCGCCACACGGCCTGGTGTCGCGCTGGCGGCGAGGGCGGCTGGGCGCGTCGCGTTACGGCGACGCCTAG

Protein sequence : 
MRELYGALYGAAEGVAEALIAALVVLLNLLPAPLAEPFQYGFMQRALLTTLVVGAVCGVLSCFVVLRRWALLGDAISHAV
LPGVAVAYLLAWPYFVGAFVTGALTALGIGFIERHTRIKEDTAMGLMFTGAFALGVVMISRIATATHLMHILFGNVLGVR
MPVLLLTLLAGAATLLAVFLFYKELSLYIFDPTQASAVGINTAAVHYGLMLLLTLTIVASLETVGVILVVAMLITPGATA
YLLSNNLPRMMLLAAGVGMVSGVVGLYLSFYLNVASGGTIVLVASGLFVLALIFAPHGLVSRWRRGRLGASRYGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-43 45
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-43 45
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-44 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-44 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-44 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-44 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0769 YP_003704447.1 ABC-3 protein BAC0442 Protein 2e-51 46
Trad_0769 YP_003704447.1 ABC-3 protein BAC0352 Protein 2e-44 43
Trad_0769 YP_003704447.1 ABC-3 protein BAC0441 Protein 5e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0769 YP_003704447.1 ABC-3 protein VFG0528 Protein 2e-44 43