Gene Information

Name : Trad_0004 (Trad_0004)
Accession : YP_003703690.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : -
Position : 4389 - 5840 bp
Length : 1452 bp
Strand : +
Note : COGs: COG0469 Pyruvate kinase; InterProIPR001697:IPR015793:IPR015794:IPR015813:IPR 015795:IPR011037:IPR018209; KEGG: ddr:Deide_00040 putative pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: C1CXJ4 P

DNA sequence : 
ATGCGCCAGGTTCGCCGAACCAAGATCGTCGCCACCTTGGGGCCGGCGAGCAGCGACCCCGAGGTCATCAAAAACCTCAT
CCAGGCGGGGGTCAACGTCTTTCGGCTTAACTTCTCGCACGGCAGCCGCGAGACGCACCAAAACAACATCGCACTGATCC
GGCAGGAGGCGGCGCGACTCGGCACCCCCATCGGCGTGCTGCAAGACCTTCAAGGCCCGAAGATCCGCACCACCACCTTT
GCCGAGGGCAAGGTCATGCTGACCGCCGGGCAGCGTTTTAACCTGACCTGTGACGACACCTCCCCCGGGGACGCTGCGCG
CGTGGGCGTCACCTACCCCAACCTGTTTGCCGACGTCAAGGTCGGCGACACGCTGCTTTTAGACGACGGGCGGCTCGCGC
TGCGCGTCACGGCGGTGCGCGGCGAGACCATCGAGACCGAGGTCACCCTCGGGGGGGTGCTCTCGAACAACAAGGGGATC
AACATCCCTGACGCTGACCTGTCGATCCCCGCGCTGACCGACAAGGACGTCGAGGACCTGCTCTTTGGAGCGGAGCTCGA
CGTCGACTGGGTGGCGATGAGCTTCGTGCGGAGCCGCGACGACCTGCTGCTCGCTCGGCACTACCTCGCGAGGGCAGGGT
CGCGGGCGAAGCTGATGGCCAAGATTGAAAAGCCGTCGGCGGTCGCCCGCTTCGACGAGATCCTCGCCGAGGTCGACGGC
ATCATGGTCGCGCGCGGCGATCTGGGGGTCGAGCTCCCCCCCGAGCGGGTACCGATCATTCAAAAGCGCCTGATCCGCGC
CTGCGTCGAGGCGGGCAAACCGGTCGTGACCGCGACGCAGATGCTCGAGAGCATGATCTCGAGCCCGACGCCGACGCGCG
CGGAGGCCTCCGACGTGGCCAACGCCATCTACGACGGCACCGACGCCATTATGCTCTCGGCCGAGACGGCGGTCGGGAGC
TATCCGGTCGAAGCGGTGCGGATGATGGCCCGCATCGCCCTATCGGTCGAGGGGGACGCGAGCTACCAGGCCAACTTGCG
CGAGCACTACCCGCAACCCGACAGCACCACGGCCGATGCGGTGTCGCTCGCCGCCTGCCAGATGGCGCACTTTCTCTCCG
CCAGGATGATCGTGACCTTTACCTCGTCGGGGACGACGGCGCTGCGCGTGGCGCACAACCGCCCCTCGGCGCCCATCTTG
GCGCTGACCCCGAGCGAGCGGGCCTACCGGCAGCTCAGCCTCTCGTGGGGGATCCTGCCGGTATTCTCCGAAGAGATCCA
TTCGACCGACGAGATGGTCGAGGTCGCCAACGCCAAGATCATCGAGCTGATGAAGCGCACGGCGGGTCTTACCGTCGGCG
ACCGCTACGTGATCACCGCAGGCGTCCCTTTCGGTATGCGCGGCACCACCAACCTCATCCGTGTCGAGGTGATCCGCGAA
ACCCCCGGATAG

Protein sequence : 
MRQVRRTKIVATLGPASSDPEVIKNLIQAGVNVFRLNFSHGSRETHQNNIALIRQEAARLGTPIGVLQDLQGPKIRTTTF
AEGKVMLTAGQRFNLTCDDTSPGDAARVGVTYPNLFADVKVGDTLLLDDGRLALRVTAVRGETIETEVTLGGVLSNNKGI
NIPDADLSIPALTDKDVEDLLFGAELDVDWVAMSFVRSRDDLLLARHYLARAGSRAKLMAKIEKPSAVARFDEILAEVDG
IMVARGDLGVELPPERVPIIQKRLIRACVEAGKPVVTATQMLESMISSPTPTRAEASDVANAIYDGTDAIMLSAETAVGS
YPVEAVRMMARIALSVEGDASYQANLREHYPQPDSTTADAVSLAACQMAHFLSARMIVTFTSSGTTALRVAHNRPSAPIL
ALTPSERAYRQLSLSWGILPVFSEEIHSTDEMVEVANAKIIELMKRTAGLTVGDRYVITAGVPFGMRGTTNLIRVEVIRE
TPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 1e-75 45
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 1e-75 45
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 1e-75 45
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 3e-75 45
pykA NP_273151.1 pyruvate kinase Not tested IHT-A Protein 2e-69 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0004 YP_003703690.1 pyruvate kinase VFG0479 Protein 5e-76 45