Gene Information

Name : Trad_0345 (Trad_0345)
Accession : YP_003704027.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 394004 - 394813 bp
Length : 810 bp
Strand : -
Note : COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: bbe:BBR47_56970 probable ABC transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0Z

DNA sequence : 
ATGCCTACCTTGCACACCCAACACCTCTCGCTGGGCTACCTCGAGCAGCTCATCGTCCCCGATTTGTCGCTCGCCATCCC
CGAAGGGCAGATCACCGCGCTCGTCGGCGCCAACGGCTCGGGCAAGTCGACCATCCTCAAGGCGCTCGCGCGCATTTTAA
AGCCGCGCTCGGGAGCGGCCTACCTCGACGGCAAGGCGATTCACCGCCTGTCCACCAAACAGGTCGCCAAAGCGCTCGCC
ATCTTGCCGCAAAACCCCGAAGCCCCCGAAGGCCTCACCGTCCACGAGCTCGTCTCGTATGGGCGCTTCCCCCACCAGCG
CGGCCTCGGGGGGCTCAACCGAGACGACCACCGCGCGATCCATAAGGCGCTCGCGCTCACCGGTATGACGGTGTTCGCCG
AACGGCCGGTGGGCAGCCTCTCGGGGGGGCAGCGGCAGCGGGCGTGGATCGCTATGGCGCTCGCCCAAGGGACGGACGTG
CTGCTTCTGGACGAGCCCACGACCTTTCTCGACATGGCGCACCAGCTCGAGGTGCTGCAGCTTTTAGAGCGCCTCAACCG
CGAGGAGGGGCGCACCATCGTGATGGTGGTGCACGACCTCAACCACGCGAGCCGCTACGCGCAGCACATGGTCGCCATCG
TCCGCGGGGAGGTGGCGGTCGCCGGCACGCCCGCCGAGGTGATGACCCCGGAGAACCTGCGCCGCGTGTTCGCCATCGAA
GCCGACATCGTCACCGACCCGCGCAGCGGCGTGCCGCTCTGCATCCCTTACGGGCTGAGGCCGCGGGACAACCCGAGTAT
CGGGTTATAA

Protein sequence : 
MPTLHTQHLSLGYLEQLIVPDLSLAIPEGQITALVGANGSGKSTILKALARILKPRSGAAYLDGKAIHRLSTKQVAKALA
ILPQNPEAPEGLTVHELVSYGRFPHQRGLGGLNRDDHRAIHKALALTGMTVFAERPVGSLSGGQRQRAWIAMALAQGTDV
LLLDEPTTFLDMAHQLEVLQLLERLNREEGRTIVMVVHDLNHASRYAQHMVAIVRGEVAVAGTPAEVMTPENLRRVFAIE
ADIVTDPRSGVPLCIPYGLRPRDNPSIGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-57 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-56 49
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-56 47
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 46
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 46
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-52 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-52 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-52 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-52 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-53 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-53 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0345 YP_003704027.1 ABC transporter-like protein BAC0164 Protein 3e-57 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0345 YP_003704027.1 ABC transporter-like protein VFG1042 Protein 3e-57 49
Trad_0345 YP_003704027.1 ABC transporter-like protein VFG0925 Protein 1e-58 45