Gene Information

Name : Trad_0292 (Trad_0292)
Accession : YP_003703975.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1087
EC number : -
Position : 338752 - 339819 bp
Length : 1068 bp
Strand : -
Note : COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR008089:IPR016040; KEGG: app:CAP2UW1_3278 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C7RIG9 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epi

DNA sequence : 
ATGGAACGCGTGATGACGACAACGACAACCTATCACCTCCTGCAAGAGCGCTTGCGCAGGGCGCCCCGAACGTGGCTCGT
AACCGGCGCCGCGGGGTTTATCGGTTCACACCTGCTCGAAACGCTCCTAAAGCTCGAGCAACGGGTCGTGGGTCTCGACA
ACTTCGCGACCGGCCACCGCCACAATTTAGACGAGGTCCAGCGGGCGGTCGGCGAGGCCGCCTGGTCGCGCTTGCGCTTT
ATCGAGGGGGATATCAGCGACCTCGCGACCTGCCGGGAGGCGCTCGCGGGCGTCGACGCCGTGCTGCACCAAGCGGCGTT
CGTCTCCGTCCCGGGCTCCATCGAGGACCCGCTTCTCAACCACCGGAGCAACGTCACGGGGTTTTTAAACCTGCTCGTTG
CCGCGCAGGAAAGGGGGCTTAAGCGCTTTGTGTACGCCTCCTCGAGCGCCGTCTACGGCAACGCCGAAACCCTCCCCGCG
CGCGAAGAGGCGGTCGGCGACGCGCTCTCCCCGTACGCGGCGAGCAAGGCCATGGACGAGCTCTACGCGGGCGTGTTCAC
CCGCCTGCACGGCCTCGAGGCCATTGGGCTGCGCTACTTCAACATCTTCGGGCCGCGCCAGGACCCCAACGGCGCCTACG
CGGCGGTGATCCCCAAGTGGACCGCGCGGCTGCTGTCGGGTCAGCGCGGGGTGATCTTCGGCGACGGCTCCGCCACCCGC
GACTTCTGCTTCGTCGGTAACGTCGTGCAGGCAAACGTGCTCGCCGCCACGACGGAGAATCCGGCGGCGTTCGGCGAGGT
CTTTAACGTCGGTAACGGCGGCGCCACGACGACCAGGGCGTTATACGAAACGCTGCGAGACCGGCTCGCCGAGGTGACGG
GCCGCGAGGACCTGCGGAGGCTCGAGCCGCGCTTCGACCCGCCCCGTCCGGGCGACATCGCCCACTCGAGGGCGGACATC
AGCAGAGCGCAACGGCTTTTGGGCTTTGAACCCGACGTGTCCGTCGAGGAGGGGCTTAGGCGGACGCTGGCGTGGTACGC
AGCCAGAGCGCAGACGCCCGCACGCTAA

Protein sequence : 
MERVMTTTTTYHLLQERLRRAPRTWLVTGAAGFIGSHLLETLLKLEQRVVGLDNFATGHRHNLDEVQRAVGEAAWSRLRF
IEGDISDLATCREALAGVDAVLHQAAFVSVPGSIEDPLLNHRSNVTGFLNLLVAAQERGLKRFVYASSSAVYGNAETLPA
REEAVGDALSPYAASKAMDELYAGVFTRLHGLEAIGLRYFNIFGPRQDPNGAYAAVIPKWTARLLSGQRGVIFGDGSATR
DFCFVGNVVQANVLAATTENPAAFGEVFNVGNGGATTTRALYETLRDRLAEVTGREDLRRLEPRFDPPRPGDIAHSRADI
SRAQRLLGFEPDVSVEEGLRRTLAWYAARAQTPAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 5e-82 50
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 5e-82 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_0292 YP_003703975.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 2e-82 50