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Name : Trad_2171 (Trad_2171) Accession : YP_003705827.1 Strain : Truepera radiovictrix DSM 17093 Genome accession: NC_014221 Putative virulence/resistance : Resistance Product : major facilitator superfamily protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 2351628 - 2352905 bp Length : 1278 bp Strand : - Note : COGs: COG2814 Arabinose efflux permease; InterPro IPR001958:IPR016196:IPR011701:IPR005829; KEGG: rba:RB990 tetracycline-efflux transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Q7UXZ3 Tetracycline-efflux transporter; PFAM: Major Facilitator Su DNA sequence : ATGTCGGAGTCAAACGCGATAGTGCGCCGCGCGAGCATGATCTGGGTGCTCGTCACGCTGTTTTTGGACGTCTTGGGGCT GGCCTTTATCATCCCCATCTTGCCGGGGCTGGTCGGCGACCTCCTGGGTGAAAGCAGCGCTTTAGTGGCGCGCTTTTACG GGTTGATCGCCGCGGCGTACGCGCTCATGCAGTTTCTCTTCGCGCCCCTTCTAGGCGCGCTCTCCGACCGCTACGGGCGG CGCCCGGTGCTGTTGGCGTCGATTTTTGGCTCTGCGGTCTCCTACTTGCTGCTGGCCTTTGCGCCTTCGCTCGCGTGGCT CGTGTTCGGGCGGCTGATCGCGGGGGTGGCGGGCTCGAGCCTGACGACCGTCAACGCCTACATCGCCGACGTCTCGACGC CGGAGACGCGCGCGCAGAACTTCGGCCTCGTCGGGGTGGCGTTCGGCCTCGGGTTTATCTTCGGTCCCGCGTTTGGCGGC GTGCTGGGCGCTATCGACCTGCGTTTGCCGTTTTTCGTCGCGGCGGGGCTCTCAGCCCTCAACGGGCTCTACGGCCTTTT TATCCTCCCCGAGTCGCTCCCCTTGGGCCGCCGCAGCCCCTTTCGCTGGCGCCGCGCGAACCCCGTCGGGAGCATCGGCG CCTTGGGGGCGTACCCGCTCGTCGGGGGGCTCGCGCTCGCCTTCGTGTTCGTCTCGCTCGCGCAGCGGGGGCTAGAGAGC ACCTGGGTGCTCTACACGAGCTACCGCTTCGGTTGGGGGGAGGCCACGAACGGCCTGACGCTCGGGTTAGTCGGGCTCAT GGCGGTGTTCGTCCAGGGTTTTTTAATCCGCCCAACGGTGCGGCGCCTAGGTGAGCGCCGCACGGTCGTAGTCGGGCTCA GCATCTCCACGGCGAGCTACCTGCTCTTTGGCCTGGCGACAGCGGGTTGGATGATGCTCGTGGCCATCGTCGTGGGTGCT TTCGGCGGGGTCGCGGGGCCGGCCATCCAGGGGCTCGTCGCGGGCTCGGTCCCGCCGGAGGGGCAGGGGAAGGTGCAGGG GGCGTTGGCGTCCTTGACGAGCCTGACGAGCGTCGTCGCACCGGTTGTTTTCACGGCGGGGCTGTTCGGGTTTTTTACCT CCCCCGCCGCCCCCGTTCACCTCCCCGGCGCCCCCTTCTTGCTCGGCTCGCTCCTGCTCGCCTGCGGTCTCGCGCTGACC GTGCGGCTCTTTCGCCGCGTGCCGCCCGCCGCTCCCGCCAAGCCCCCCCAAACGCCCGTCGCCAAGCTCGAGTCCTAA Protein sequence : MSESNAIVRRASMIWVLVTLFLDVLGLAFIIPILPGLVGDLLGESSALVARFYGLIAAAYALMQFLFAPLLGALSDRYGR RPVLLASIFGSAVSYLLLAFAPSLAWLVFGRLIAGVAGSSLTTVNAYIADVSTPETRAQNFGLVGVAFGLGFIFGPAFGG VLGAIDLRLPFFVAAGLSALNGLYGLFILPESLPLGRRSPFRWRRANPVGSIGALGAYPLVGGLALAFVFVSLAQRGLES TWVLYTSYRFGWGEATNGLTLGLVGLMAVFVQGFLIRPTVRRLGERRTVVVGLSISTASYLLFGLATAGWMMLVAIVVGA FGGVAGPAIQGLVAGSVPPEGQGKVQGALASLTSLTSVVAPVVFTAGLFGFFTSPAAPVHLPGAPFLLGSLLLACGLALT VRLFRRVPPAAPAKPPQTPVAKLES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 3e-45 | 43 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-45 | 43 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-45 | 43 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-45 | 43 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 3e-45 | 43 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 2e-45 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | AY264780.2.gene3.p01 | Protein | 8e-49 | 43 |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | NC_011586.7045189.p0 | Protein | 1e-42 | 43 |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | CP001485.1.gene2821. | Protein | 1e-45 | 43 |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | AF534183.gene.p01 | Protein | 1e-45 | 43 |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | NC_010410.6002597.p0 | Protein | 1e-45 | 43 |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | AF090987.gene.p01 | Protein | 3e-44 | 42 |
| Trad_2171 | YP_003705827.1 | major facilitator superfamily protein | X75761.gene.p01 | Protein | 7e-45 | 42 |
