Gene Information

Name : Trad_2082 (Trad_2082)
Accession : YP_003705739.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 2252519 - 2254678 bp
Length : 2160 bp
Strand : +
Note : COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR006416:IPR001757:IPR000695:IPR 008250:IPR005834:IPR018303; KEGG: tth:TTC1371 copper-exporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase;

DNA sequence :
ATGGCTGAGGAACCGTTGCCGGGTTCGCCGCGGGCCGAGAGACCTTCAAGCCTCGAGAAAACCGGGGAGCGCCTCCGCGA
CCGCGTGGAGCACGCGCGGCCGTTAGGGGCCGCTCATGATGACCCCCGCAAGCAGGGCCACCAGGGGCACGGTGCCCATC
ACGCGCACGGCGGGCACAAAGGGCACGAAGGACACGACAAGCACGCCGGACACAGCGCCCACATGTTCCGCAACCGCTTC
TGGCTGTCGCTGGCGCTCACGCTGCCCATTCTCTACTTCGACATGCACTTTCAGGAATGGTTTGGCTACACCGCCGTGCA
GTTTCCCGGCGTGGGTTGGGTCCAGCCGGTTTTGAGCGTCATCCTCTACTTCTATGGCGGCTGGCCCTTCCTGGAGGGCG
CGCTGCGCGAACTCCGGGCCCGGCAGCCCGGCATGATGACCTTGATTGCGCTCGCCATCAGCGTCGCGTTCTTCTACAGC
CTGGTGGTGACCTTCGGCGTCATCGAGGGGATGCCGCTCTACTGGGAGCTCGCCACCTTGATCCTGATCATGGTCTTGGG
CCACTGGATCGAGATGGCCTCGGTAGAGGGTGCCAGCAGGGCGCTCGAGCACCTCGCCTCGCTGGTGCCTGTGAGCGCGC
ACAAGCTCGTGGGGAATAGAACCGAAGAGGTTTCAGTAGACGCGTTGAGAGCGGGCGACCGCATCCTCATCCGCCCCGGT
GAACAGGTTCCCGCCGACGGCGTGGTGATGGACGGCGCCTCGAGCGTCAATGAAGCCTTTCTCACCGGCGAGTCGCGCCC
GGTCCCTAAAGAGCAGGGGGCTGAAGTCGTCGCCGGGGCGGTGAACGGCGAAGGGGCTTTAACCGTTGAGGTGAAGCGCA
CGGGCGATCAAACCACCCTGAGCCAGATCCAACGCCTCGTAGCAGAGGCCCAGGCGTCGCGCAGCCGCTTCCAGAACCTC
GCCGACCGCGCCGCCGGCTGGCTCACCTACATCGCCGTGGGCGCGGGCACGCTCACCTTCCTAGCCTGGCTGCTGCTCGG
TTTCGACCTGAACTTCGCCATCACCCGCACGGTGACGGTGCTGGTCATGGCCTGCCCGCACGCCCTGGGCCTCGCCATCC
CGCTGGTCATCGTCAACGCGACCGCCATGAGCGCCAAAAACGGCATCCTGGTGCGCAACCGCGAGGCGTTCGAGCGCGCC
CGCGACCTCAAAATCGTCGCCTTTGACAAGACCGGCACGCTCACCGAAGGCAAGTTCGGGGTGCGGAGCGTCTACACGGG
CGGCGTGGCCGAGGAAGAGGCGCTGACCCTGGCCGCTGCACTCGAGGGCCGTAGTGAGCACCCGCTCGGCAAGGCGATCG
TCGAAGAAGCCGACGCGCGAACCCTGGGCGTTCCCGACGTGCGCGACTTCGAGGTGGTCGCCGGGAAGGGCGTCGCCGGA
ACCGTGGACGGGACCCGCTACCGCATCGGGCGGCCCGAGTGGGTGAATGAGGGGGGGTTGAGCCTCCCCCCTGAGCTTCA
GCGCGGGCTTGACGAGGCCGAGGGGCGTGGTGAAAGCGTCATCGCCATGATGGATGAGGGGCGCGTGCTCGCCCTCTTTG
CCCTCGCCGACAAGGTGCGTGGGAGCGCCAAGGAGGCGGTGAAACGGCTCAAGGAGGCAGGCGTCCAGCCCGTCATGATC
ACCGGCGACGCCGAGGCGGTCGCCAAGACCGTGGCGCAGGAGCTGGGCATCGCGCGCTATCACGCCCGTGTGCTGCCGGA
GAACAAGGCGCGGATCGTTCGAGAGCTCAAGCAAGGCGGCCCGACCGCCTTCGTCGGCGACGGCATCAACGACGCCCCCG
CCCTTTTGGAAGCCGACCTCGGTGTCGCCATCGGCGCGGGCACAAACGTCGCCATCGAGTCGGCGGACCTGGTCCTCATC
GAGGACGACCCGCTCGATGTGGTGCGCGCCCTGCGGCTCTCCAAAGCGACCTACAGCAAGATGATTCAGAACCTCTTCTG
GGCCACCGGCTATAACGCGGTCGCGCTGCCGCTCGCGGCGGGCGTCGCCTACGCCTGGGGAATTCTGCTCTCCCCTGCCG
TCGGCGCGGTCTTCATGAGCGCCTCGACGGTGATCGTCGCGGTCAACGCCGTGCTCCTTAGACGCACGAGGCTGGCGTGA

Protein sequence :
MAEEPLPGSPRAERPSSLEKTGERLRDRVEHARPLGAAHDDPRKQGHQGHGAHHAHGGHKGHEGHDKHAGHSAHMFRNRF
WLSLALTLPILYFDMHFQEWFGYTAVQFPGVGWVQPVLSVILYFYGGWPFLEGALRELRARQPGMMTLIALAISVAFFYS
LVVTFGVIEGMPLYWELATLILIMVLGHWIEMASVEGASRALEHLASLVPVSAHKLVGNRTEEVSVDALRAGDRILIRPG
EQVPADGVVMDGASSVNEAFLTGESRPVPKEQGAEVVAGAVNGEGALTVEVKRTGDQTTLSQIQRLVAEAQASRSRFQNL
ADRAAGWLTYIAVGAGTLTFLAWLLLGFDLNFAITRTVTVLVMACPHALGLAIPLVIVNATAMSAKNGILVRNREAFERA
RDLKIVAFDKTGTLTEGKFGVRSVYTGGVAEEEALTLAAALEGRSEHPLGKAIVEEADARTLGVPDVRDFEVVAGKGVAG
TVDGTRYRIGRPEWVNEGGLSLPPELQRGLDEAEGRGESVIAMMDEGRVLALFALADKVRGSAKEAVKRLKEAGVQPVMI
TGDAEAVAKTVAQELGIARYHARVLPENKARIVRELKQGGPTAFVGDGINDAPALLEADLGVAIGAGTNVAIESADLVLI
EDDPLDVVRALRLSKATYSKMIQNLFWATGYNAVALPLAAGVAYAWGILLSPAVGAVFMSASTVIVAVNAVLLRRTRLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 1e-94 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_2082 YP_003705739.1 copper-translocating P-type ATPase BAC0629 Protein 1e-152 54
Trad_2082 YP_003705739.1 copper-translocating P-type ATPase BAC0079 Protein 7e-124 45
Trad_2082 YP_003705739.1 copper-translocating P-type ATPase BAC0383 Protein 3e-109 42
Trad_2082 YP_003705739.1 copper-translocating P-type ATPase BAC0101 Protein 3e-89 41