Gene Information

Name : Trad_2066 (Trad_2066)
Accession : YP_003705723.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2234159 - 2234869 bp
Length : 711 bp
Strand : -
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006:IPR011991:IPR001867; KEGG: ttj:TTHA1593 hypothetical protein; PFAM: response regulator receiver; transcriptiona

DNA sequence : 
ATGCCTTTACCCGAGACCTCGCCCCTCACGCCCCCGCGCCCCCGGTTGCTCCTCGTCGAAGACGACCCTGGGATTCGCGA
GTCGCTCGAGCTCGGGCTCGGTTTTGAAGGGTTCGAGGTCGTGACGGCCGCTTCGGCGAGCGAAGGGTTGCGGCTTTTCG
CGCAAGAGGCCATCGACGTGGTGATTTTAGATATCTTGCTCCCCGGTTCCGACGGCTACCGCGTCCTTGAAGCGATCCGC
ACCCCACACAACCCCAAGCGCGAGGTGGCGGTGCTGTTTTTGACCGCTCTTGACACCATTGAGGACCGCGTGCGGGGGTT
GCGCCTCGGCGCCGACGACTACCTCGTCAAACCCTTTTCCTTAGCTGAGCTCGTCGCCCGCATCGAGGCGCTCTGGCGGC
GGTTGCAGCGCCCCGTCACGGCGCTATGCGCCGCCGACGTGCGGCTCTACCCCGACAAGCGAGAAGCGTGGCGTGGTGGC
GTGCCGCTCGAGCTCGCGCCCAAGGAGTTCGCGCTCTTGCAGGTGCTGCTCGAGCACCGGGCGCGGGTGGTCTCGCGTGA
GGCGCTGATGCAGCGCCTCTGGGGGGAGCGGGTCGACCCCAACACGCTCGAGGTGCACGTTTCAAGCCTCCGCCGCGCCC
TGGGTGACCCGCCGATGATTCGCACCGTGCGCGGCTACGGCTACCTGCTCGATGAGGCCGACCTTTCGTGA

Protein sequence : 
MPLPETSPLTPPRPRLLLVEDDPGIRESLELGLGFEGFEVVTAASASEGLRLFAQEAIDVVILDILLPGSDGYRVLEAIR
TPHNPKREVAVLFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWRRLQRPVTALCAADVRLYPDKREAWRGG
VPLELAPKEFALLQVLLEHRARVVSREALMQRLWGERVDPNTLEVHVSSLRRALGDPPMIRTVRGYGYLLDEADLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-34 44
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator BAC0083 Protein 6e-29 42
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator VFG1389 Protein 6e-29 44
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-30 42
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator VFG0473 Protein 5e-30 41
Trad_2066 YP_003705723.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-27 41