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Name : Trad_0100 (Trad_0100) Accession : YP_003703785.1 Strain : Truepera radiovictrix DSM 17093 Genome accession: NC_014221 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 115882 - 117804 bp Length : 1923 bp Strand : - Note : COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003781:IPR003869:IPR016040; KEGG: cts:Ctha_2155 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; CoA-binding domain protein; SPTR: B3QVK6 Polysaccha DNA sequence : GTGCGACCTGATCCCATGCCTGAGATGCCACCTGCGACCGAGAGCCCCAAGTCCCCCCCGCCGAGCGGCAAACCGAGCCG GCTCAACCGGCTTTTTAAACTGTCGTTAGACGCCCTGTCGTGGCTGCTCGCGACGCCGATCGCCTTCTTTATCCGCTACG ACTGGGCGCCCCCGGCCGACACGCTGGGCCCGATGGCCGTCGCGACCGCCGGGCTGTTCGCCCTCAAACTCGCCACGACC TCGTTTTTCGGCCTCTATCAGCGGAGCTGGACCAAGGTCGCCTTCCGCGAGCTCGGCGACATCGTCCGGGCCGTTATCGG CGCCGCCGCGCTCGGCAGTTTGATCCTCTTGTGGCTCGGCCCCAGCCTCGACATCCCCCGCTCGGTCGCCTTTCTCGACG GTCTGGTGACGCTCTTTTTGATGACGGGGATGCGCGCGTTTGCCCGCTACCGGCACGAGGCCTCGCTCGGCCAACATAGC GCGCGCCGCGCCAAGTCGGTTCTGGTGATCGGCGCGGGGGAGGCGGGCTCACTGGTCGTCCGCGAGATGCTGCGGCACCC GGAGATGGGGCTGCGGCCCGTGGGTTTTTTGGACGACGACCGCAAAAAGGTGGGCTACCGCATCGCCACGGTGCCGGTTT TGGGGACCACCCAAGACATCAACAAGGTGGTCCGTAGCCACGACGTCGACGAGGTGCTGATCGCCATCCCCTCGTCGGAC GGCCGCGTGGTGCGCGAGATCGTCGGACGCATCGAAGGGGCCAAGGCGGGGCTCAAGTACCGCATCATCCCCGGCGTCTA CGAGCTCCTCAGCGGCCAGGTCGGGATCAGCCGCATCCGCGAGGTGCAGATCGAAGACCTGCTGCGCCGCCCGCCGGTCG AGCTCGACACCGCCGCGATTTCAAGCTACCTCACCGACCGCGTGGTGATGATTACCGGCGCGGGCGGGTCGATCGGCTCG GAGCTCGTGCGGCAGATCTGCCGCTTCCGGCCCAAAGAGCTCATCCTCTTCGGGCGCGGCGAGAACAGCATCTACACCCT TGAGCGCGAGCTCGAGCGCGACTGGCCCGACATCCCCTACCACAGCGTCATTGCGGGCGTGCAGCACATCGTCCGGCTCG ACTACGTCTTCCGGCGCTACCAACCCGAGGTGGTCTTTCACGCCGCCGCGCACAAGCACGTGCCGCTCATGGAGCTCAAC CCCGAAGAGGCGGTGTTTAACAACATCATCGGCTCGAAAAACCTGGTGACGCTCGCCCTTAAGTACGGCGTGACGCACTT CGTCAACATCTCGACCGACAAAGCCGTCAACCCGACGTCCGTCATGGGCGCCTCCAAGCGGATGGTCGAACGGCTCGTGC AGAGCGCCGCGCTGCGCGCCTCGCCCGAGCAGACTTTTGTCTCGGTGCGCTTCGGCAACGTCCTGGGCAGCCGCGGCAGC GTCATCCCGGTGTTTAAGCAGCAGATCCTCGCGGGGGGTCCGGTGACGGTCACGCACCCCGACATGACGCGCTACTTTAT GACCATCCCCGAGGCGTCGCAGCTCGTGTTGCAGGCGGCCGGTCAGGGGAAAAACGGCGAGATCTATATCCTCGACATGG GTGAGCCGGTGCGGATCGTCGACCTCGCCCGCGACCTCATCAAGCTCTCGGGGTTCGAGCCCGACGTGGACATCCCCATC GCCTTCTCCGGGGTGCGCCCCGGCGAAAAGCTCTATGAAGAGCTCATGACCGACGAGGAGCGCGGTGACGCCACTGCCCA CGAAAAGATCTTCGTCGCCAAACCCTCACCCCTCGACCAGGGGGCGCTCGAGCGCACCGTCCAGACGCTTCAAGAGGCCG CCCTGCGCTCCGACCACGCGGTCATCCGCCGGGAGCTCAAGGCGTACATCAGCGGCTCGCTCCTCGAGGACGTGCCGGCT TAG Protein sequence : MRPDPMPEMPPATESPKSPPPSGKPSRLNRLFKLSLDALSWLLATPIAFFIRYDWAPPADTLGPMAVATAGLFALKLATT SFFGLYQRSWTKVAFRELGDIVRAVIGAAALGSLILLWLGPSLDIPRSVAFLDGLVTLFLMTGMRAFARYRHEASLGQHS ARRAKSVLVIGAGEAGSLVVREMLRHPEMGLRPVGFLDDDRKKVGYRIATVPVLGTTQDINKVVRSHDVDEVLIAIPSSD GRVVREIVGRIEGAKAGLKYRIIPGVYELLSGQVGISRIREVQIEDLLRRPPVELDTAAISSYLTDRVVMITGAGGSIGS ELVRQICRFRPKELILFGRGENSIYTLERELERDWPDIPYHSVIAGVQHIVRLDYVFRRYQPEVVFHAAAHKHVPLMELN PEEAVFNNIIGSKNLVTLALKYGVTHFVNISTDKAVNPTSVMGASKRMVERLVQSAALRASPEQTFVSVRFGNVLGSRGS VIPVFKQQILAGGPVTVTHPDMTRYFMTIPEASQLVLQAAGQGKNGEIYILDMGEPVRIVDLARDLIKLSGFEPDVDIPI AFSGVRPGEKLYEELMTDEERGDATAHEKIFVAKPSPLDQGALERTVQTLQEAALRSDHAVIRRELKAYISGSLLEDVPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-95 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-95 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Trad_0100 | YP_003703785.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-94 | 47 |
| Trad_0100 | YP_003703785.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-76 | 42 |
