Gene Information

Name : Slip_0969 (Slip_0969)
Accession : YP_003702313.1
Strain : Syntrophothermus lipocalidus DSM 12680
Genome accession: NC_014220
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 999917 - 1000696 bp
Length : 780 bp
Strand : +
Note : COGs: COG1338 flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: swo:Swol_0865 flagellar biosynthesis protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: Q0AYM1 flagellar biosynthetic protein; TIGR

DNA sequence : 
ATGAATAAAGTCGCCAGGGTAGTGGCTGTCGGCTTTGTGCTTGCGGCCTTCTTAATTATGGTTGTCGTATGCTTGACCGG
TGAGGCTCAAGCCCAACAGTTCCAGATTCCTCAGGTCAGCATCAATATCGGCGGTGAATCCCAGGGAGAAACCGGGGTTT
CTCAAGCTTTGCAGATATTGGCTTTGCTTACTATCTTGTCGCTGGCGCCGGCGATATTAATACTGCTTACCTCGTTTACC
AGGATAATCGTGGTGTTGTCTTTTGTCAGGAGTGCCCTGGCCACCCAGCAGATGCCGCCCAACCAGATTCTTGTAGGTTT
GGCTTTGTTTTTGACGTTTTTCGTAATGGCTCCGACCTGGAAAGAAGTCAACGAAAAGGCTTTGCAGCCTTATTTCCAGG
GAGAAATAACCCAGGACCAGGCGTTCACTCGGGGTATGGCGCCCCTGAGAACTTTTATGTTCAAACAAACTCGGGAAAAG
GACTTGGCGTTGTTCGTGAAAATGGCGAAAATCCAGCGTCCTCGCACTTACGGGGATGTTCCTAACTACGTGCTTATTCC
GGCTTTTGTTATCAGTGAATTAAAGACCGCGTTTGAGATCGGGTTTATCATCTTTGTTCCTTTTTTGGTTATCGACATGG
TGGTTTCCAGCGCCCTCATGTCCATGGGAATGTTGATGCTTCCACCTATGATGATATCGCTCCCTTTCAAGATATTGCTG
TTTGTCTTGGTAGACGGGTGGAACTTGGTCGTCAACTCGCTCCTTATGAGTTTTCGATGA

Protein sequence : 
MNKVARVVAVGFVLAAFLIMVVVCLTGEAQAQQFQIPQVSINIGGESQGETGVSQALQILALLTILSLAPAILILLTSFT
RIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVMAPTWKEVNEKALQPYFQGEITQDQAFTRGMAPLRTFMFKQTREK
DLALFVKMAKIQRPRTYGDVPNYVLIPAFVISELKTAFEIGFIIFVPFLVIDMVVSSALMSMGMLMLPPMMISLPFKILL
FVLVDGWNLVVNSLLMSFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-25 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-25 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-24 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-21 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-20 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-20 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-21 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-21 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-24 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-24 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slip_0969 YP_003702313.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-24 43
Slip_0969 YP_003702313.1 flagellar biosynthetic protein FliP VFG0519 Protein 1e-21 41