Gene Information

Name : Slip_0495 (Slip_0495)
Accession : YP_003701844.1
Strain : Syntrophothermus lipocalidus DSM 12680
Genome accession: NC_014220
Putative virulence/resistance : Unknown
Product : pyrimidine-nucleoside phosphorylase
Function : -
COG functional category : F : Nucleotide transport and metabolism
COG ID : COG0213
EC number : 2.4.2.2
Position : 501617 - 502945 bp
Length : 1329 bp
Strand : +
Note : COGs: COG0213 thymidine phosphorylase; InterProIPR018090:IPR017872:IPR020072:IPR000312:IPR 013102:IPR017459:IPR000053; KEGG: swo:Swol_0609 pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; Pyrim

DNA sequence :
GTGAACGCATACGACATCATCAAGAAAAAGCGGGATGGAGGCGAGCTTTCGAAAGAAGAGATAGAGTTCCTGGTCAAGGG
TATAGCCAACGGCAATGTCCCTGATTACCAGATAGCGGCCTGGGCTATGGCGGTGTACTTCCAAGGGATGAACGAGCGCG
AAACCACTGACCTTACGCTGGCCATGGCTCACTCCGGAGATACAGTTGACCTGAGTAAAGTGCAAGGGATACCTGTAGAT
AAACACAGCACCGGCGGGGTAGGGGACAAAACTACTTTGGTGGCAGTGCCTTTGACCGCAGCTGCCGGAGTCCCGGTGCC
CAAGATGTCCGGCCGGGGCTTGGGGCACACCGGGGGAACCATCGATAAGCTGGAATCCATACCTGGATTCAAAGTTGAAA
TAGACGTGGCTGAATTCGTTCAGCAGGTAAACAGGGTAAAGGCTGCGGTAATTTCTCAGTCTGGCAATCTGGTGCCTGCA
GATAAAAAGCTTTACGCCATAAGGGATGTAACCGCCACCGTTGACAGCATACCGCTCATAGCTTCCAGCGTTATGAGCAA
GAAGCTGGCAGCAGGAGCTCGCGGTATAGTGCTGGATGTAAAGGTGGGGAAAGGGGCATTCATGAAAGACTTGGACCAGG
CGTTTCAGCTGGCCCAGCTCATGGTGGATATAGGATTTAAGGCCGGTCGTGAAGTCGTGGCGGTTCTGAGCGACATGGAC
CAGCCTCTCGGGTGCGCGGTAGGGAATGCCCTGGAGATAGAGGAAGTAGTTAAGACCTTGAAAGGAGAGGGAGCCCCGGA
TCTTACCGAACTTTCAGTTACCTTGGCCTCTTACATGCTACTGGTAGGGGGAAGGGTTGGGGACTTCGCGTCGGCTCGAG
AACTGGTGCAGAAAAACCTGACCAGCGGGGCCGGGTTTGAGAAATTCCGGGAAATGGTTATCGCTCAGGGAGGAGACGCG
AGGTGCTTGGACCGGCCTCAAGATTATTTTCGGGCTAGCCTGCAGGTAAGTGTGCCGTCGCCTTCAGACGGATATGTAAC
TGACATAGATGCTGAGCAGGTGGGCTTGGCAACTATGAGGCTAGGAGCCGGGAGAGAACGGGCCGGAGAACGTATAGACC
ATTCAGTGGGCGTTGTTTTGCGACGTAAGAAAGGAGACAGTGTGCGCTCCGGGCAGGCTCTGGCTGTAATTCACGCTAAC
GACCCTTACCGGCTGGAAACCGCGCGGGCAATGCTGGCCCAGGCTTACCGGCTGGACCAGCAGCCGCCGCCAAAACGCCC
GTTGATTTTGGGCGTAGTAACCCAAGACGAGGTCATAAGATACGTATGA

Protein sequence :
MNAYDIIKKKRDGGELSKEEIEFLVKGIANGNVPDYQIAAWAMAVYFQGMNERETTDLTLAMAHSGDTVDLSKVQGIPVD
KHSTGGVGDKTTLVAVPLTAAAGVPVPKMSGRGLGHTGGTIDKLESIPGFKVEIDVAEFVQQVNRVKAAVISQSGNLVPA
DKKLYAIRDVTATVDSIPLIASSVMSKKLAAGARGIVLDVKVGKGAFMKDLDQAFQLAQLMVDIGFKAGREVVAVLSDMD
QPLGCAVGNALEIEEVVKTLKGEGAPDLTELSVTLASYMLLVGGRVGDFASARELVQKNLTSGAGFEKFREMVIAQGGDA
RCLDRPQDYFRASLQVSVPSPSDGYVTDIDAEQVGLATMRLGAGRERAGERIDHSVGVVLRRKKGDSVRSGQALAVIHAN
DPYRLETARAMLAQAYRLDQQPPPKRPLILGVVTQDEVIRYV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
deoA YP_005163381.1 Thymidine phosphorylase Not tested Not named Protein 3e-67 44