Gene Information

Name : Slip_1427 (Slip_1427)
Accession : YP_003702755.1
Strain : Syntrophothermus lipocalidus DSM 12680
Genome accession: NC_014220
Putative virulence/resistance : Unknown
Product : porphobilinogen deaminase
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0181
EC number : 2.5.1.61
Position : 1482942 - 1483892 bp
Length : 951 bp
Strand : -
Note : COGs: COG0181 porphobilinogen deaminase; InterPro IPR000860; KEGG: chy:CHY_1208 porphobilinogen deaminase; PFAM: porphobilinogen deaminase; PRIAM: hydroxymethylbilane synthase; SPTR: Q3ACT3 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PF

DNA sequence : 
ATGAAGGGAACAACGCTCATGGCAGTGAAGGTAAGAATAGGGACTAGAGGAAGCCGCCTGGCTTTGTGGCAGGCCAACTA
CGTGGTAAAGAGGCTTCGTGATTGTTTTCCAGGGCATGAGTTCGAGATTACTGTTATCAAGACCAAAGGAGACAAGATAA
CCGACGTGGCTCTGTCCAAGATCGGGGACAAGGGCCTTTTTACTAAAGAAATAGAAATGGCTTTATTGAGAGAGGAAATA
GACATTGCTGTGCACAGTCTGAAAGACCTCCCAACCACATTGCCGGAAGGAATCAGGTTAGCGGCGGTTTTAGAAAGGGA
AAACCCTCTGGATGTCTTGCTTTCCTTCAAGGGGTACAGCTTGTCTGGGTTGCCGCGGGGGGCTCGCATCGGCACTTCCA
GTTTAAGGAGAACAGCTCAGCTGAAACGGCTGCGGCCGGACATCGAAACGGTTAACCTGCGGGGTAACGTGGAGACCAGA
ATCAGAAAAATGGAAGACGAGGGGTTAGACGGGATTGTCTTGGCTTATGCTGGGGTTAAACGAATGGGTTTCTTACACCT
GGTAACGGAGATCTTGCATCCGGACCAAGTGATTCCAGCGGTTGGACAGGGAGTCATCGCCCTTGAGATAAAGGAGGATG
GAAAGGTAGCGGAAGAACTGGTTAAGCCCTTAAATCATCAACCCACCTGGGCAGAAATAACAGCTGAAAGGGCATTCTTG
AAAGCTATAGAAGGTGGTTGTCAGGTTCCTTGCGGTTGTCACGCGTCTTATCAAGAAGGATATTTGACGGTAGACGGCCT
GGTAGCATCGCTGGATGGTCAGGTCGTGTATCGTGACCGCGTAAGCGGCTCGGAGGCTTTCGCCCAGCAACTGGGAGAGG
AATTGGCGAGGCGGATTCTAGCTATGGGCGGAGGTTCTTTACTGGAAACAGTGAGGTGTATGGGGGATTAG

Protein sequence : 
MKGTTLMAVKVRIGTRGSRLALWQANYVVKRLRDCFPGHEFEITVIKTKGDKITDVALSKIGDKGLFTKEIEMALLREEI
DIAVHSLKDLPTTLPEGIRLAAVLERENPLDVLLSFKGYSLSGLPRGARIGTSSLRRTAQLKRLRPDIETVNLRGNVETR
IRKMEDEGLDGIVLAYAGVKRMGFLHLVTEILHPDQVIPAVGQGVIALEIKEDGKVAEELVKPLNHQPTWAEITAERAFL
KAIEGGCQVPCGCHASYQEGYLTVDGLVASLDGQVVYRDRVSGSEAFAQQLGEELARRILAMGGGSLLETVRCMGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00327 YP_008207792.1 Porphobilinogen deaminase Not tested AbaR25 Protein 2e-56 47
BJAB0868_00331 YP_008211657.1 Porphobilinogen deaminase Not tested AbaR26 Protein 2e-56 47