Gene Information

Name : Arch_0143 (Arch_0143)
Accession : YP_003696525.1
Strain : Arcanobacterium haemolyticum DSM 20595
Genome accession: NC_014218
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 179540 - 180295 bp
Length : 756 bp
Strand : +
Note : COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: cag:Cagg_3554 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: B8G9N9 ABC transporter; PFAM: ABC transporter

DNA sequence : 
ATGAAAAAAGATTCTGCTGGCACACTGGCATGTTCTACGTCGAACATGTCGGTGTGCTACCGCATTGATCCGGTTTTGTA
CGGAGTTGATTTTGAGGTTCCGCAGGGTGTTGTGATGGGTATTGTTGGCCCGAATGGCGCCGGAAAATCGACGTTGATTA
AGGCCATGCTGGGTTTGGTGAAGCCGTTGACTGGTTCGGCGAGTTTCTTTGGCCAGCCGCTGGCGCGTGTGCGAGACCGA
GTTGGGTATATGCCGCAGAGCGTGAGTGTGGATTGGGATTTCCCAACCACGGTTATCGACGTCGTTACCATGGGTACGTA
CGGAAAGCTTGGGTGGTTGCGCCGTCCGGGGCGTGCGGAGCGTGCTCAGGCGTTGGAGGCTCTGGAGGCGACGGGGATTG
CTGACTTGGCGTCGCGCCAGATTGGCGAGCTGTCGGGCGGCCAGCGTCAGCGTGTGTTTTTGGCGCGTGCGTTGGTTCAG
CAGCCGGATTTGTATTTTATGGATGAGCCGTTCCAGGGTGTGGATGCGAAGAGTCAGCGTGCGATCGTTGAGGTGCTGCA
TCGGTTGCGTTCGCAGGGGAAGACTGTTGTGATTGTGCATCACGATTTGGCTACGGTTGCGGATTATTGTGACCACGTGA
CGTTGTTGAATCGGCACATTGTGGCGGCTGGCCCGTGTGAGACTACGTTGACTGACGCGAACATTCGTACTGCTTACAAG
GTTTCTGACGACGACGAATGGGAGAGTCTCGCGTGA

Protein sequence : 
MKKDSAGTLACSTSNMSVCYRIDPVLYGVDFEVPQGVVMGIVGPNGAGKSTLIKAMLGLVKPLTGSASFFGQPLARVRDR
VGYMPQSVSVDWDFPTTVIDVVTMGTYGKLGWLRRPGRAERAQALEALEATGIADLASRQIGELSGGQRQRVFLARALVQ
QPDLYFMDEPFQGVDAKSQRAIVEVLHRLRSQGKTVVIVHHDLATVADYCDHVTLLNRHIVAAGPCETTLTDANIRTAYK
VSDDDEWESLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-39 42
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-39 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-44 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-44 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-45 42
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-45 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arch_0143 YP_003696525.1 ABC transporter BAC0400 Protein 4e-60 54
Arch_0143 YP_003696525.1 ABC transporter BAC0440 Protein 3e-49 45
Arch_0143 YP_003696525.1 ABC transporter BAC0350 Protein 2e-45 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arch_0143 YP_003696525.1 ABC transporter VFG0526 Protein 2e-45 42