Gene Information

Name : Arch_1208 (Arch_1208)
Accession : YP_003697535.1
Strain : Arcanobacterium haemolyticum DSM 20595
Genome accession: NC_014218
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1342096 - 1342989 bp
Length : 894 bp
Strand : +
Note : COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: cur:cur_1459 transposase for insertion sequence; PFAM: Integrase catalytic region; SPTR: B1VGV7 transposase for insertion sequence; PFAM: Integrase core domain

DNA sequence : 
GTGATCGTTTCACAGCCCGTGTTCATTTGTGCGACGTTAAATGAGCAACGTCAGGGAGGCTTCATCACTTCCCGCGGCTA
TCGTAACGCATATGGTACGCCGAGCGCTAGGAGCATCCGGGACCGTGAGCTGGTTGCCAAGGTTCTCCAGATCCATGGGG
AGAACTATGGTGTCTACGGTGTGCGGAAAATGTGGCACGCGCTCTCCCGCCGTGGCGTGCGGGTCGGCCGCGAGCAGACC
GCGAGGCTCATGCGTCTGGCAGGAGTATCCGGGAAGGGCAAGGGACGTTCCCCGATCACGACACACAAAGCCCGGAGGGA
AGATACCAGACCAGGTTTGGTTCATCGCGAGTTTCACGCCGCTGGTCCGAACCGGCTGTGGGTCGCGGACATTACTTATG
TTCGAACCGCTCAAGGGTTCGTTTATGCGGCGTTTGTGACGGACGTGTTCTCTCGCAAGATCGTGGGCTGGGCACTATCA
GATTCCATGCGGACCGAGGCATTACCGTTGCAGGCGTTGAATCAGGCGATCACGAGCGCGAAGGAAACGGCCGGGGTGAT
ACATCACTCAGACCACGGATCGCAGTATGTGTCGATTGTGTATAACGATCGGCTCACAGATGCTGGTATCACTCCATCAA
CCGGGACGGTTGGGGATTCCTACGACAACGCACTAGCCGAGAACGTCAACAGCTCATATAAGAACGAGCTGATCAATAAC
CATCGATGGAAAGACGTTCTTGAGGTCGAGATCGCTACCTTCGAATGGGTGACCTGGTGGAACCAGACCCGGCTCCACCA
AGCCCTTGACTACCGCACCCCGGTCGAGGTTGAGAACTACTACTGGCGCATCGCGAGCACATCAGAGAAAATGAAAACCA
GGGCAAACGCCTAG

Protein sequence : 
MIVSQPVFICATLNEQRQGGFITSRGYRNAYGTPSARSIRDRELVAKVLQIHGENYGVYGVRKMWHALSRRGVRVGREQT
ARLMRLAGVSGKGKGRSPITTHKARREDTRPGLVHREFHAAGPNRLWVADITYVRTAQGFVYAAFVTDVFSRKIVGWALS
DSMRTEALPLQALNQAITSAKETAGVIHHSDHGSQYVSIVYNDRLTDAGITPSTGTVGDSYDNALAENVNSSYKNELINN
HRWKDVLEVEIATFEWVTWWNQTRLHQALDYRTPVEVENYYWRIASTSEKMKTRANA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-102 71
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 7e-54 54
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-46 49
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-48 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-47 45
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-47 45
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-47 45
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-46 45
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-47 45
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-47 45
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-47 45
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-47 45
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-47 45
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-48 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-47 45
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-48 45
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-47 45
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-47 45
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-47 45
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-45 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arch_1208 YP_003697535.1 integrase catalytic subunit VFG1602 Protein 2e-45 44