Gene Information

Name : Snov_3636 (Snov_3636)
Accession : YP_003695526.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3833061 - 3833906 bp
Length : 846 bp
Strand : +
Note : PFAM: ABC transporter; KEGG: rlg:Rleg_3455 ABC transporter

DNA sequence : 
ATGACCATGATCGACACGCTGCTCTCCCCCTTCCAGTTCGGCTTCATGGTCAACGCCCTCGTCATCTCCGGCCTCGTAGC
CGTGACGATGGCGCTGCTCTCCTGCTTCCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGACGCCATCTCGCATGCGGTGT
TCCCTGGCGTGGTGCTGGCCTATATCGTCGGGCTGCCCTTCGCGATCGGCGCTTTCGCCGCCGGCATGTTCTGCGCCGTG
GCGACGGGCTTCCTCAAGGATAACAGCCGCATCAAGCAGGACACGGTGATGGGCATCGTGTTCTCCGGCATGTTCGGGGT
GGGGCTGGTGCTCTATGTGAAGATCCAGTCCGAGGTGCATCTCGACCACATATTGTTCGGCGACATGCTCGGCGTGTCCT
GGGGCGACATCGGCGAGACCGCGCTGATCGCCACTGTCGTCGCCGGCATCATCGCGGTGAAGTGGAAGGACTTCCTGCTG
CACGCCTTCGATCCGGCGCAGGCGCGGGCGGTGGGCCTGCGCGTCGGGCTGCTGCATTACGGCCTGCTGTGCCTGATCTC
GCTGACCATCGTCGGCGCGCTGAAGGCGGTGGGGCTGATCCTCGCCATCGCCATGCTGATCGCGCCGGGCGCCGTCGCTT
TCCTGCTGGCGCGCTCCTTCGGCGGCATGCTGGTGCTGTCGGTCGCGGTCGCGGTCGGGGCGTCGCTGCTCGGCGTCTAC
CTGTCCTTCTTCCTCGACAGCGCGCCGGCGCCGACCATCGTGCTGCTGATGAGCCTCGTCTTCGTCGCGGCCTTCATCCG
CTCTTCACTGGTGACCGCGCGAACGGAGACCCGCGAGCGGGCGTAA

Protein sequence : 
MTMIDTLLSPFQFGFMVNALVISGLVAVTMALLSCFLVLKGWSLMGDAISHAVFPGVVLAYIVGLPFAIGAFAAGMFCAV
ATGFLKDNSRIKQDTVMGIVFSGMFGVGLVLYVKIQSEVHLDHILFGDMLGVSWGDIGETALIATVVAGIIAVKWKDFLL
HAFDPAQARAVGLRVGLLHYGLLCLISLTIVGALKAVGLILAIAMLIAPGAVAFLLARSFGGMLVLSVAVAVGASLLGVY
LSFFLDSAPAPTIVLLMSLVFVAAFIRSSLVTARTETRERA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-83 70
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-83 70
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-83 70
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-83 70
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-83 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3636 YP_003695526.1 ABC transporter BAC0352 Protein 7e-84 70
Snov_3636 YP_003695526.1 ABC transporter BAC0442 Protein 1e-64 55
Snov_3636 YP_003695526.1 ABC transporter BAC0441 Protein 3e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3636 YP_003695526.1 ABC transporter VFG0528 Protein 7e-84 70