Gene Information

Name : Snov_3634 (Snov_3634)
Accession : YP_003695524.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3831311 - 3832207 bp
Length : 897 bp
Strand : +
Note : KEGG: rhi:NGR_c31030 iron transporter, ATP-binding component; PFAM: ABC transporter; SMART: ATPase AAA

DNA sequence : 
ATGAATGCGGGCCTCGCGGTCACCGGCGTGACCGTCACCTATCGCAACGGCCACACCGCCCTGCGCGACGCCAGCTTCTC
GATCCCGACGGGCACTATCACGGCGCTGGTCGGGGTCAACGGCTCCGGCAAATCGACCCTGTTCAAGGCGATCATGGGCT
TCGTGCGCCTCGCCGCGGGCGAGATCGCCATCCTCGGCGGCAACGTCGATCAGGCCTTGAAGCGCAACCTCGTCGCCTAT
GTGCCGCAGAGCGAGGAGGTCGACTGGAACTTCCCCGTCCTCGTCGAGGACGTAGTGATGATGGGCCGCTACGGCCATAT
GGGGCTGATGCGCATTCCCCGCGCCGCCGACCGGCGCGCGGTGACCGACGCGCTCGCCCGCGTCGGGATGGGGGAGTTCC
GCCACAGGCAGATCGGCGAGCTCTCCGGCGGGCAGAAGAAGCGCGTCTTCCTCGCCCGCGCGCTGGCGCAGGACGCCAAG
GTCATCCTGCTCGACGAGCCCTTCACCGGCGTCGACGTGAAGACCGAGGAGGCGATCATCGCCCTGCTCAAGGCGCTGCG
TGACGAGGGCCGGGTGATGCTGGTCTCGACCCACAATCTCGGCAGCGTGCCGGAATTCTGTGACCGCACCGTGCTGATCA
AGGGCACGGTCCTCGCCTATGGCCCGACCGCGCAGACCTTCACCGAGGCCAATCTGGAGAAGACCTTCGGCGGCGTGCTG
CGCCATTTCGTGCTCGGCGGCGCCGGGCTGCACGCGGACGACGACCGCCGACAGCTCGCCGTGCTCTCCGACGACGAGCG
CCCGCTCGTGCTCTATGGCGAGAAGGGCGCGATGCAGCAGCAGACCGCGGAAGAACATGTGAGCGAGAAGCATCCCGCCG
AGGAGAAGACCTCGTGA

Protein sequence : 
MNAGLAVTGVTVTYRNGHTALRDASFSIPTGTITALVGVNGSGKSTLFKAIMGFVRLAAGEIAILGGNVDQALKRNLVAY
VPQSEEVDWNFPVLVEDVVMMGRYGHMGLMRIPRAADRRAVTDALARVGMGEFRHRQIGELSGGQKKRVFLARALAQDAK
VILLDEPFTGVDVKTEEAIIALLKALRDEGRVMLVSTHNLGSVPEFCDRTVLIKGTVLAYGPTAQTFTEANLEKTFGGVL
RHFVLGGAGLHADDDRRQLAVLSDDERPLVLYGEKGAMQQQTAEEHVSEKHPAEEKTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-92 72
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-92 72
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-92 72
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-92 72
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-92 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3634 YP_003695524.1 ABC transporter BAC0350 Protein 1e-92 72
Snov_3634 YP_003695524.1 ABC transporter BAC0440 Protein 9e-90 62
Snov_3634 YP_003695524.1 ABC transporter BAC0400 Protein 4e-50 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3634 YP_003695524.1 ABC transporter VFG0526 Protein 1e-92 72