Gene Information

Name : Snov_3633 (Snov_3633)
Accession : YP_003695523.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3830382 - 3831314 bp
Length : 933 bp
Strand : +
Note : PFAM: periplasmic solute binding protein; KEGG: rlg:Rleg_3452 periplasmic solute binding protein

DNA sequence : 
ATGCGGGGAAGGTCGAGGCGTGCGGCTCTGGCCGGGCTGATGGCAGCCGGCATCATCGGCGTGGCAGCCATCCCCGGCGC
TTCGGCGCAGGAGGCCGGCAAGCCGAAGTTCAAGGCCGTGACCACCTTCACCGTGATTGCCGACATGGCGCGCAACGTGG
CGGGCGACGCGGCCATCGTGGAATCGATCACCAAGCCCGGCGCCGAGATCCACAATTACGCACCCACTCCCGGCGACATT
CAGCGGGCGCAGGGCGCCCAGCTCATCCTCTGGAACGGGCTGAACCTGGAGCTCTGGTTCGAGAAGTTCTTCCAGAACCT
GAAGGACGTCCCCGGCGTCGTCGTCTCGGCCGGCGTCGAGCCGATGGGCATCACGGAAGGCCCCTACAGCGGCAAGCCCA
ATCCGCATGCCTGGATGTCGCCGTCCAACGCGCTGATCTATGTCGACAACATCCGCGACGCCTTCGCGAATTACGATCCG
GCCAATGCCGCGACCTATGAGGCCAACGCGAAGGCCTACAAGGCGAAGATCGAGGCCGCGGTCGCGCCGATCCGGACGAA
GCTGGACACGATTCCCGCCGACAAGCGCTGGCTGGTGTCGAGCGAGGGCGCATTCTCCTATCTCGCCCGCGATTTCGGGC
TGAAGGAGCTCTATCTCTGGCCGATCAACGCCGACCAGCAGGGTACGCCGCAGCAGGTGCGCAAGGTGATCGATTCCGTG
CGCAAGAACGGCATCCCCGCCGTGTTCAGCGAGAGCACCGTCTCCGACAAACCGGCCCGGCAGGTGGCGCGCGAGACCGG
CGCGCATTATGGCGGCGTGCTCTATGTCGACTCGCTCAGCGAGGCCGACGGCCCGGTGCCGACCTATATCGACCTGCTCG
CCGTGACCACGAGCACGCTGGAGAAGGGCCTCGCCGAGGGATTGTCGCAATGA

Protein sequence : 
MRGRSRRAALAGLMAAGIIGVAAIPGASAQEAGKPKFKAVTTFTVIADMARNVAGDAAIVESITKPGAEIHNYAPTPGDI
QRAQGAQLILWNGLNLELWFEKFFQNLKDVPGVVVSAGVEPMGITEGPYSGKPNPHAWMSPSNALIYVDNIRDAFANYDP
ANAATYEANAKAYKAKIEAAVAPIRTKLDTIPADKRWLVSSEGAFSYLARDFGLKELYLWPINADQQGTPQQVRKVIDSV
RKNGIPAVFSESTVSDKPARQVARETGAHYGGVLYVDSLSEADGPVPTYIDLLAVTTSTLEKGLAEGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-94 76
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-94 76
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-94 76
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-94 76
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 8e-95 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3633 YP_003695523.1 periplasmic solute binding protein BAC0349 Protein 5e-95 76
Snov_3633 YP_003695523.1 periplasmic solute binding protein BAC0439 Protein 1e-86 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3633 YP_003695523.1 periplasmic solute binding protein VFG0525 Protein 5e-95 76