Gene Information

Name : Snov_3550 (Snov_3550)
Accession : YP_003695443.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 3740133 - 3740801 bp
Length : 669 bp
Strand : -
Note : KEGG: ret:RHE_PF00548 two-component response regulator protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR

DNA sequence : 
TTGCAGAGGTACCAAAATATCCCGCAGGCCAAGCTTGGCGTCAGCGAGGCCGGATCGGTGGGGCGCGTCTATGTCGTGGA
CGACGACGCCAGCGTGCGCGCCGCGCTGAGCAGCCTGCTGCGTTCGCTCGATCTGGAAGTCCGGGCGTTCCCCGGCGTCG
ACCAGTTCCGCGCCGAGGCGGATGCCACCGCGCCTGCCTGCCTGCTGCTCGATGTGCGCATGCCCGGCATTTCCGGCCTC
GAATTCCAGGACCAGCTCGCCGGTTTCGCCCCCGATCTGCCGGTGATCTTCATCACCGGCCATGGCGACGTGCCGATGAG
CGTGCGGGCGATGAAGGCCGGCGCGGTCGACTTCCTGCAGAAGCCGTGGAGCGAGCAGGCCGTGCTCGACGCGGTGTTCT
CCGCCCTCGCGCGCAGCCGGGCCAGGGCGCAGGTGAGCTCCGAACGTGATGCGCTGGCGCGGCGCGCGGCCACGCTCACT
CCGCGCGAGCGGGAGGTGATGCTGCTGGTGACGCGCGGGCTCGCCAACAAGCAGATCGCCTATGAGCTCGGCCTGCAGCT
GATCACCGTGAAGATCCACCGCGGCAATGTCATGCGCAAGATGCACGCCGCCTCGCTGGTCGATCTGGTGATGCAGGCGA
AGACGCTCGGCCTGGCCGGCGGCGACTGA

Protein sequence : 
MQRYQNIPQAKLGVSEAGSVGRVYVVDDDASVRAALSSLLRSLDLEVRAFPGVDQFRAEADATAPACLLLDVRMPGISGL
EFQDQLAGFAPDLPVIFITGHGDVPMSVRAMKAGAVDFLQKPWSEQAVLDAVFSALARSRARAQVSSERDALARRAATLT
PREREVMLLVTRGLANKQIAYELGLQLITVKIHRGNVMRKMHAASLVDLVMQAKTLGLAGGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 1e-17 41
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 1e-17 41
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 1e-17 41
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 7e-18 41
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 9e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3550 YP_003695443.1 LuxR family transcriptional regulator VFG0488 Protein 3e-18 41