Gene Information

Name : Snov_3264 (Snov_3264)
Accession : YP_003695157.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 3428243 - 3429523 bp
Length : 1281 bp
Strand : +
Note : KEGG: atc:AGR_L_3348 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGGAACATCTCATCCTGTTCGGCAGCTTCGTCCTGCTGATGGCGATCGGCACGCCCATCGCCTTCTGCCTCGGCATCTC
CTCGCTGGCGACGGTGATCTATCTCGGCCTGCCGCCCATCGTGGTGTTCCAGCAGCTGAACTCCGGCATCAACGTCTTCG
CCATGATGGCGATACCGTTCTTCATCTTCGCCGGCGACCTGATGGTGCGCGGCGGCATCGCGCTCAGGCTCATCCGCTTC
GCCGCCGGCCTCGTCGGCCATCTTCGTGGCGGGTTGGGGCAGGTGAACATCGTCGCCTCGACGCTGTTCGGCGGCATCTC
CGGCTCGGCGGTGGCCGATGCCTCGGCAGTCGGCGGGCTGATGATCCCGCAGATGGCCAAGCGCGGCTATGACCGCGACT
ATGCGGTCAATGTCACGGTGAACGCGGCGATCATCGCGCTGATGATCCCGCCCTCGCACAACATGATCCTCTATTCCATC
GCCGCCGGCGGCAATGTCTCGGTGGCCGACCTGTTCACCGCCGGTATCGTGCCGGGGCTGCTGCTCGCGTTGGCGCTGAT
GGTCACCGCCTGGTGGGTGGCGCGCCGGCGCGGCTACCCGTCCGAGCCGTTCCCCGGCTTCGCGCGGCTGGGCTTCTTCT
TCCTGTCCTCGCTGCCGGGGCTCTTGCTCATCGCCATCATCTTCGGCGGCGTGCGCTCGGGCATCTTCACCGCCACCGAG
AGCTCCTGCATCGCCGTGCTCTACGCGCTCGCCGTCGCGGTGCTGGTCTATCGCGAGCTCGACTGGACCGGTTTCGTCGA
CGCGACGCTCGGCGCGGTACGAACCACGGCGATGGTGCTCTTGGTCATCGGCGCCGCGGCGTCCTTCGGCTGGCTGATGT
CCTACCTGCAGGTGCAGCAATCGGCGATCGGGCTGATCCGCTCGATCTCCGAAGACCCGATCATGGTGCTGCTGCTGATA
AACCTCGTGCTGCTGTTCCTCGGCACCTTCATGGACATGGCGCCGATGGTGATCATCTGCACGCCGGTGCTGCTGCCGGT
GGTGAAGGCCTTCGGCATCGACCCCGTGCATTTCGGCGTGGTGATGATCCTCAACGCCGGCATCGGGCTGAACACCCCGC
CGGTGGGCACGGTGCTGTTCGTCGGCTGCGCGGTGGGCGGCATCTCGATCCGGCAGGCGATGCGCACGATCTGGCCGTTC
TTCGGGGCGAGCGTCGCGGTGCTGCTGCTCGTCACCTATGTGCCGGCGCTGTCGCTCTGGCTGCCGGCCCAGTTCCGCTG
A

Protein sequence : 
MEHLILFGSFVLLMAIGTPIAFCLGISSLATVIYLGLPPIVVFQQLNSGINVFAMMAIPFFIFAGDLMVRGGIALRLIRF
AAGLVGHLRGGLGQVNIVASTLFGGISGSAVADASAVGGLMIPQMAKRGYDRDYAVNVTVNAAIIALMIPPSHNMILYSI
AAGGNVSVADLFTAGIVPGLLLALALMVTAWWVARRRGYPSEPFPGFARLGFFFLSSLPGLLLIAIIFGGVRSGIFTATE
SSCIAVLYALAVAVLVYRELDWTGFVDATLGAVRTTAMVLLVIGAAASFGWLMSYLQVQQSAIGLIRSISEDPIMVLLLI
NLVLLFLGTFMDMAPMVIICTPVLLPVVKAFGIDPVHFGVVMILNAGIGLNTPPVGTVLFVGCAVGGISIRQAMRTIWPF
FGASVAVLLLVTYVPALSLWLPAQFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-33 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-33 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_3264 YP_003695157.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 8e-34 41