Gene Information

Name : Snov_2721 (Snov_2721)
Accession : YP_003694629.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2855230 - 2857848 bp
Length : 2619 bp
Strand : -
Note : TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: rpt:Rpal_4921 ATP-dependent chaperone ClpB; SMART: AAA ATPase

DNA sequence :
ATGAATTTCGAAATCTATACCGAACGCGCGCGTGGATTCGTGCAGTCGGCGCAGTCGCTTGCGCTGCGCGAGGGCAACCA
GCAGTTCACCCCCGAGCACCTGCTGAAGGTACTGCTCGACGACCCGGAAGGGCTTTGCGCCGGGCTGATCCAGCGCTCCG
GCGGCGACCCGCGCATGGTGCTCGCCGACACCGAGGCGGCGCTGAAGAAGCTGCCCAAGGTGCAGGGTTCCGGCGCCGGG
CAGGTCTATCTCGCGCCCGCCACCGCGCGCGTCTTCGACGCCGCCGAGCAGGCGGCCAAGAAGGCCGGCGACGGCTATGT
CACGGTCGAGCGGCTGCTGCTCGCGCTGGCGCTGGAGAAGGACAGCGAGGCGGGCAAGATCCTCGCCAAGGCGGACGCGA
CTCCGCAGAAGATCAACGCCGCCATCGAGGCGCTGCGCAAGGGTCGTACCGCGGACAGCGCTACCGCCGAGAATGCCTAT
GACGCGCTCAAGAAGTACGCCCGCGACCTGACGAGCGCGGCGCGCGAGGGCAAGCTCGACCCGGTGATCGGCCGCGACGA
AGAAATCCGCCGCACCATCCAGGTGCTGTCGCGGCGCACCAAGAACAATCCCGTCCTCATTGGCGAGCCCGGCGTCGGCA
AGACCGCCATCGTCGAGGGCCTTGCCCTGCGCATCGTCGACGGCGACGTGCCCGAGAGCCTGAAGGACAAGAGCCTTCTC
GCGCTCGACATGGGTTCGCTGATCGCCGGCGCGAAATATCGCGGCGAGTTCGAGGAGCGGCTGAAGAGCGTGCTCTCCGA
GGTCGAGGCGGCCGAGGGCGGCATCATCCTGTTCATCGACGAGATGCACACCCTCGTCGGCGCAGGCAAGACCGACGGCG
CGATGGACGCGTCCAACCTCTTGAAGCCCGCGCTGGCGCGCGGCGAGCTGCACTGCGTCGGCGCGACCACGCTCGACGAG
TACCGCAAGCATGTCGAGAAGGACGCCGCGCTCGCCCGCCGCTTCCAGCCCGTCTTCGTCTCCGAGCCGACGGTGGAGGA
CACCATCTCCATCCTGCGCGGCATCAAGGAGAAGTACGAGCTGCACCACGGCGTGCGCATCACCGATTCGGCGCTGGTGG
CGGCGGCCACCTTGTCGAACCGCTACATCACCGACCGCTTCCTGCCCGACAAGGCGATCGACCTCGTCGACGAGGCGGCC
TCGCGGCTGCGCATGCAGGTCGATTCCAAGCCCGAGGAGCTGGATTCGATCGACCGCGAGATCGTGCGCCTGCGCATCGA
GCAGGAGGCGCTGAAGAAGGAGAGCGACGCCGGCTCGAGGGACCGGCTGAAGCGGCTGGAGAAGGAGCTGGCCGATCTCG
AGGAGCAGTCCGCCTCGCTGACCTCCCGCTGGAAGGCGGAGAAGGAGAAGCTGGGCGACGCCCAGAAGATCAAGAGCGAC
CTGGAGAAGGCGCGTGCCGAGCTCGCCAACGCCCAGCGCGCCGGCGAGTACCAGAAGGCGGGCGAGCTCGCCTATGGCAC
CATCCCCGCGCTGGAGAAGAAGCTCGCCGCCATCGAGACGCAGGAGCTCGCCGCCGAGGTGAAGGCCGGCGCCATGGTGG
AAGAGGCGGTTACCCCGGACCATGTGGCGCAGGTTGTCTCGCGCTGGACCGGCGTGCCCGTCGACAAGATGCTGGAAGGC
GAGAAGGAGAAGCTGCTGCGCATGGAGGACGTGCTGTCGAAGCGCGTCATCGGCCAGAAGGAGGCCGTGGAAGCTGTTTC
CACGGCGGTCCGTCGTGCCCGCGCGGGTCTTCAGGACCCCAACCGGCCCATCGGCTCCTTCATGTTCCTCGGCCCGACGG
GCGTGGGCAAGACCGAGCTGACCAAGGCGCTGGCCTCGTTCCTGTTCGACGACGACACCGCCCTCGTGCGCATCGACATG
TCCGAGTACATGGAGAAGCACGCGGTGGCGCGGCTGATCGGCGCTCCTCCCGGCTATGTCGGCTATGAGGAGGGCGGCGC
GCTGACCGAGGCCGTGCGGCGCCGGCCCTATCAGGTCGTGCTGTTCGACGAGGTCGAGAAGGCGCATCCGGACGTGTTCA
ACGTGCTCCTTCAGGTGCTCGACGACGGGCGCCTGACGGACGGGCAGGGCCGCACGGTCGACTTCCGCAACACGCTGATC
ATCATGACCTCGAACCTCGGTTCGGAGTATCTGGTGAACCAGCCGGATGGCGAGGACACCGAGGCCGTGCGCGACGAGGT
GATGGGCGTGGTGCGTGCGCATTTCCGCCCGGAGTTCCTCAACCGCGTCGACGAGATCGTGCTGTTCCACCGGCTGCGGC
GCGAGCAGATGGGCGCCATCGTCGATATCCAGGCCAAGCGGCTCGACAAGCTGCTGGAGGAGCGCAAGATCCGGCTGGAG
ATCACCTCCGAGGCGCGGGACTTCCTCGCCGAGAAGGGCTACGACCCGGCCTATGGCGCGCGTCCGCTCAAGCGGGTGAT
GCAGAAGCTGCTGCAGGACCCACTGGCTGGCCGCATCCTCGCCGGCACGGTGAAGGATGGCGACGTGGTCAAGGTCGAGC
GCGGGGCGGGCGAACTCCTGTTCGACACCCGCGCCGGTGCGGTGGAGGAGGCGGCCTGA

Protein sequence :
MNFEIYTERARGFVQSAQSLALREGNQQFTPEHLLKVLLDDPEGLCAGLIQRSGGDPRMVLADTEAALKKLPKVQGSGAG
QVYLAPATARVFDAAEQAAKKAGDGYVTVERLLLALALEKDSEAGKILAKADATPQKINAAIEALRKGRTADSATAENAY
DALKKYARDLTSAAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRIVDGDVPESLKDKSLL
ALDMGSLIAGAKYRGEFEERLKSVLSEVEAAEGGIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCVGATTLDE
YRKHVEKDAALARRFQPVFVSEPTVEDTISILRGIKEKYELHHGVRITDSALVAAATLSNRYITDRFLPDKAIDLVDEAA
SRLRMQVDSKPEELDSIDREIVRLRIEQEALKKESDAGSRDRLKRLEKELADLEEQSASLTSRWKAEKEKLGDAQKIKSD
LEKARAELANAQRAGEYQKAGELAYGTIPALEKKLAAIETQELAAEVKAGAMVEEAVTPDHVAQVVSRWTGVPVDKMLEG
EKEKLLRMEDVLSKRVIGQKEAVEAVSTAVRRARAGLQDPNRPIGSFMFLGPTGVGKTELTKALASFLFDDDTALVRIDM
SEYMEKHAVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLI
IMTSNLGSEYLVNQPDGEDTEAVRDEVMGVVRAHFRPEFLNRVDEIVLFHRLRREQMGAIVDIQAKRLDKLLEERKIRLE
ITSEARDFLAEKGYDPAYGARPLKRVMQKLLQDPLAGRILAGTVKDGDVVKVERGAGELLFDTRAGAVEEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-111 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-111 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_2721 YP_003694629.1 ATP-dependent chaperone ClpB VFG2076 Protein 1e-123 43
Snov_2721 YP_003694629.1 ATP-dependent chaperone ClpB VFG2084 Protein 7e-114 42