Gene Information

Name : Snov_1964 (Snov_1964)
Accession : YP_003693883.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 2054849 - 2055049 bp
Length : 201 bp
Strand : -
Note : PFAM: prophage CP4-57 regulator; KEGG: oca:OCAR_6150 hypothetical protein

DNA sequence : 
ATGCCGGACAACGACAACTACCCCCTCGTCTCTCTCAACGACGTCGTGAAGATGACGTCGCTTTCTCGCACCGCGATCAA
CATCAAACGCGCCGCTGGTACATTTCCAAAGGCCGTCTCGCTCGGTGAGAAGCGCGTAGCTTTCGTACGCGCCGAAGTCA
TGGCGTGGATCGAAGACCGCATCGCGGCCCGCGCCGCCTAG

Protein sequence : 
MPDNDNYPLVSLNDVVKMTSLSRTAINIKRAAGTFPKAVSLGEKRVAFVRAEVMAWIEDRIAARAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-06 44
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 2e-06 44
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 2e-06 44
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 3e-06 41
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 3e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_1964 YP_003693883.1 phage transcriptional regulator AlpA VFG1118 Protein 7e-07 44
Snov_1964 YP_003693883.1 phage transcriptional regulator AlpA VFG1141 Protein 7e-07 41