Gene Information

Name : Snov_1546 (Snov_1546)
Accession : YP_003693474.1
Strain : Starkeya novella DSM 506
Genome accession: NC_014217
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1602679 - 1603362 bp
Length : 684 bp
Strand : +
Note : KEGG: azc:AZC_1569 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver

DNA sequence : 
GTGAGCGGAACCAGCGTGCTGGTGGTCGACGACGAGCCGGCGATCCACCGCTTCATGGCGCCGGCGCTGGCGGCCAACGG
CTATGACGCGCTGCGGGCCGACACCGGCACGCAGGCGCTCGCACTGGTGGTGAACCGGCGCCCCGACATCGTGGTGCTCG
ACCTCGGCCTGCCGGACATGGACGGCAAGGAGGTGATCCGGCGCCTGCGCGAATGGTCGGACGTGCCGATCGTGGTGCTC
TCGGCCCGCGACCGCGAGATCGAGAAGATCGAGGCGCTCGACCTCGGCGCCGACGACTTCGTCAACAAGCCCTTCGGCAT
CGGCGAATTGATGGCGCGGCTGCGCGCGGCGCTGCGCCATCGCATGCAGGAGAAGGGCGAGACGCCGGTGCTGCGGCTCG
GCGGCATCGAGGTCGACATCCCTCGCCACCGTGTCACCCGCGACGGGGCGGAGGTGAAGCTGACGCCGAAGGAGTTCGAC
CTCGTGGCCTTCCTCGCCCGCCATCCCGGCAAGGTGCTGACCCACCGCCAGATATTGCGCGACGTGTGGGGCCCGGCGCA
TGAACACGACACGCAATATCTGCGCGTCTATGTCGGCCAGTTGCGCACCAAGCTGGAGGCGGACCCGACCAATCCGGCGC
TGATCGTCACCGAGCCCGGTATCGGCTACCGGGCGGGGGAGTAG

Protein sequence : 
MSGTSVLVVDDEPAIHRFMAPALAANGYDALRADTGTQALALVVNRRPDIVVLDLGLPDMDGKEVIRRLREWSDVPIVVL
SARDREIEKIEALDLGADDFVNKPFGIGELMARLRAALRHRMQEKGETPVLRLGGIEVDIPRHRVTRDGAEVKLTPKEFD
LVAFLARHPGKVLTHRQILRDVWGPAHEHDTQYLRVYVGQLRTKLEADPTNPALIVTEPGIGYRAGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 6e-30 43
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 6e-30 43
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 2e-30 43
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 4e-30 43
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 6e-30 43
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 6e-30 43
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 6e-37 41
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 4e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_1546 YP_003693474.1 two component transcriptional regulator AE000516.2.gene3505. Protein 6e-38 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snov_1546 YP_003693474.1 two component transcriptional regulator VFG1390 Protein 4e-30 42
Snov_1546 YP_003693474.1 two component transcriptional regulator VFG1389 Protein 5e-27 41