Gene Information

Name : DaAHT2_0272 (DaAHT2_0272)
Accession : YP_003689602.1
Strain : Desulfurivibrio alkaliphilus AHT2
Genome accession: NC_014216
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 316062 - 317468 bp
Length : 1407 bp
Strand : +
Note : KEGG: drt:Dret_1222 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGACTTCCCGTTTACTGATTATCGATGATGAGGCCGACCTGCTGGCGGCCCTGGCCCGGATTTTACCGGCGGAACTGGC
CGAGTTGCAGGTGGAAACCGCCAGTAAGGCGGAGGCCGGGCTGGCGCTGATCCGGGAGCAGAGTATCGACGTGCTGTTGC
TGGATATCCGGATGCCGGAGGTCAGCGGCCTGGATTTGCTGAGCGAAGTTAAAAAAATCGACCCCTGGGTGACGGTGGTG
ATGATGACCGCTTATGGCAGCATAGAAACGGCGGTGACGGCGGTCAAGCGCGGGGCCTATGACTTTATCACCAAACCCTT
TGAAATTCCCGACCTGGTAATGGTTTTGCAAAAGGCCCTGGAGCGCAGCCGGTTGATTCGGGAAAACATGAATTTGCGCC
AGCGGCTGCCGGAGCAGGCCGGTTTTGCCGGCTTGATCGGCCAGTCCCCGCGGATGCGCAAGCTTTACGAGGGGGTCCAG
GCCCTGGCTCGCACCGACTACAGCGTCTTGATCCGTGGGGAATCGGGCACCGGCAAGGAGCTGGTGGCCCGGGCCATTCA
TCAATTGAGCAAGCGCGGACAGCGGCCCATGGTCACCGTCAACTGCCCGGCGATCCCCGAGAACCTGCTGGAAAGCGAGC
TTTTCGGCCACAAGAAAGGGGCCTTCACCGGAGCGGACAAGGACCATGCCGGCCTTTTTCTTGAGGCTGACGGCTCCACC
CTGCTGCTGGATGAGATCGGCGATATCCCGGTGAGTGTGCAGACCAAGTTGCTGCGGGCCCTGCAGGAGCGGGAAATTCG
CCCGGTGGGCGGCGATAAGCCCCGCAGTGTGGATGTTCGCATCATCTCCAGCACCAATCAGGATCTGGAGGCCAAGATCA
AAGCGCACAGCTTCCGGGAAGATCTTTACTATCGCTTGAATGTCGTTACCCTGCACACGCCTTCGCTGGCCGAGATTCCC
GAAGATGTGCCGCTGCTGGCCGATTACTGCCTGCGGGTGGTTTGCCGGGAGCTGGAGTTGCCCCCTAAAAGCTTCAGTGT
CGCGGCGCTGCAGGAAATCGCCCGCCGCCCGTGGCCGGGCAATGTGCGCCAGTTGCAGAATTTTGTCCGCCGCATGGTGC
TTTTTGCCCCCGACCAGGAGATCGGATTGCCCGAGATCGGCGCGGTGGAAGAGCAGAGCGTGGGGCCGGCGGGGGGTAAC
GGCGGGGGAGAAGGACGTCCGGCCATCGAGCCTTACCTGCAGAGCAAGGATAAGCTGCTGGAGCGTTTTACCGCCGATTA
TGTCAAGCAGTTGCTGACCATGACCCAGGGCAATGTGACCCAGGCGGCGGATATGGCGGGGCTGAGCCGGGTGGCCCTGC
AGAAAATCATCCGGCGGCAGAAGTTGCGCGCCGAAGATTTCCGCTGA

Protein sequence : 
MTSRLLIIDDEADLLAALARILPAELAELQVETASKAEAGLALIREQSIDVLLLDIRMPEVSGLDLLSEVKKIDPWVTVV
MMTAYGSIETAVTAVKRGAYDFITKPFEIPDLVMVLQKALERSRLIRENMNLRQRLPEQAGFAGLIGQSPRMRKLYEGVQ
ALARTDYSVLIRGESGTGKELVARAIHQLSKRGQRPMVTVNCPAIPENLLESELFGHKKGAFTGADKDHAGLFLEADGST
LLLDEIGDIPVSVQTKLLRALQEREIRPVGGDKPRSVDVRIISSTNQDLEAKIKAHSFREDLYYRLNVVTLHTPSLAEIP
EDVPLLADYCLRVVCRELELPPKSFSVAALQEIARRPWPGNVRQLQNFVRRMVLFAPDQEIGLPEIGAVEEQSVGPAGGN
GGGEGRPAIEPYLQSKDKLLERFTADYVKQLLTMTQGNVTQAADMAGLSRVALQKIIRRQKLRAEDFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-63 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-63 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DaAHT2_0272 YP_003689602.1 Fis family transcriptional regulator BAC0467 Protein 6e-72 46
DaAHT2_0272 YP_003689602.1 Fis family transcriptional regulator BAC0089 Protein 2e-84 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DaAHT2_0272 YP_003689602.1 Fis family transcriptional regulator VFG1214 Protein 1e-65 45
DaAHT2_0272 YP_003689602.1 Fis family transcriptional regulator VFG0116 Protein 6e-59 43
DaAHT2_0272 YP_003689602.1 Fis family transcriptional regulator VFG1249 Protein 4e-60 42