Gene Information

Name : DaAHT2_2042 (DaAHT2_2042)
Accession : YP_003691335.1
Strain : Desulfurivibrio alkaliphilus AHT2
Genome accession: NC_014216
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2366279 - 2367541 bp
Length : 1263 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: pca:Pcar_1823 prophage P4 integrase

DNA sequence :
ATGACTCTCACCGACGCGCAAGTACGTAATGTTAAGGCAGAAGACAAGACCCGCCGCCTGTTCGATGGCGGTGGTCTGTA
CCTGGAAGTTGCCCCCAGTGGGGGCAAGTGGTGGCGGTTCAAGTATCGCTTTCCCGGCCAGGGCAAGATCCAGGAGAAAA
GATTATCCCTGGGCACCTACCCGGGGGTGGGGCTGAAAGAGGCCAGGGCGAAGCGCGACGAGATGCGCCGGCAGATCGCC
CAAGGGATAGACCCGGCCAACCTGCGCCGATCCACCAGGGGCAGCGGTGCATTGGCCGGCAGCTTCGAGGCAGTGGCCAG
GCTTTGGCACCGGAACAACTCCACCGATTGGGCACCTTCGCACAGCACCAGGTTAATCCGCCGCTTGGAGGCACACGTCT
TCCCCTACCTGGGCAACAGACCCGTTGGCGACATCACCGCCCCGGATTTGATGAACGTGCTCGAGCGCATCAAGAACAGC
GGCCACACCGAAACCGCCAGACGAATACAGACCATTTGCGGCCAGGTGTTCCGTTATGCCGTGCAAAAGGGGTTTGCCGA
GTACGACCCATCATCAGCTCTGAAGGGTTGCCTGGGCAAGACCACGGCCAAAAACATGGCGACGATCACCGAGCCGGCGG
AGGTTGGCCGACTGCTACAGGCCATAGACGAATATCCCGGCACCCAGGTGGTCCGCTGCGCCTTGCAGTTGGCGCCGCTG
TTTTTTGTACGCTCCGGCGAGCTGCGCAACGCCAGGTGGGATGAATTCGACCTGGTGAACCGGGAGTGGAAAATTCCGGT
GGAGCGCATGAAGATGCGCCAGGATGAAAAACGAGCCCGCCAGGGCCAGGTAGGGCATATCGTGCCCCTGGCCACCCAGG
CGGTAAAAATCCTGGAAGAAGAGCTTCGCCCGCTCACCGGTCGTTGCGCCCTGGTCTTTCCAGGGCTGCGCAGCCGTGAC
CGGGCCATAAGCGACGCCACGCTGACCAACGCGCTACGGCGCATGGGTTACACCGGCGACGAAATGACCATTCATGGACT
TCGCCACATGGCCAGCACCCTGTTGCACGGCCTGGGCTTTCAATCACTGGTCATCGAACGGCAACTGGCCCACAAAGACC
GAAACCGAATCCGTGGGGTCTATAACCAGGCCGATTACCTGGAAGAGCGCCGGCGGATGATGCAGAGCTGGGCTGATTAC
CTGGGCCAGCTCAAAGCCGGTAAGGCGGAAAAGGTGGTGCCGATAAACAGGTTGGCAGGGTGA

Protein sequence :
MTLTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPGVGLKEARAKRDEMRRQIA
QGIDPANLRRSTRGSGALAGSFEAVARLWHRNNSTDWAPSHSTRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNS
GHTETARRIQTICGQVFRYAVQKGFAEYDPSSALKGCLGKTTAKNMATITEPAEVGRLLQAIDEYPGTQVVRCALQLAPL
FFVRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEEELRPLTGRCALVFPGLRSRD
RAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGFQSLVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADY
LGQLKAGKAEKVVPINRLAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-71 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-71 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-70 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-70 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-70 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 4e-69 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-69 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-70 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-70 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-70 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-70 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-70 41
int AAK00456.1 Int Not tested SHI-1 Protein 2e-64 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DaAHT2_2042 YP_003691335.1 integrase family protein VFG0626 Protein 3e-71 42
DaAHT2_2042 YP_003691335.1 integrase family protein VFG1693 Protein 4e-71 41