Gene Information

Name : DaAHT2_1718 (DaAHT2_1718)
Accession : YP_003691029.1
Strain : Desulfurivibrio alkaliphilus AHT2
Genome accession: NC_014216
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2006842 - 2007585 bp
Length : 744 bp
Strand : +
Note : KEGG: gsu:GSU0423 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGTTTAAAGTTCTTTTAGCCCTTGCCATCCTGCTGCTGCCCGCCTCGGCTCTGGCCCAGCAGGGCATCCCCTTGCCCAG
CATCCAGATCGGCATCGAGGAGGCCACCAGCCCCCGGGAAGTATCGGTGCTCATCGAATTGCTGCTGGTCTTCACGGTCC
TGGCCATGGCCCCGGCCATCCTGCTGATGATGACCTGCTTCACCCGCCTGATCGTGGTCTTTTCCTTTCTGCGCAACGCC
ATCGGCACCCAGCAGATGCCGCCCAACCAGGTGCTGGTGGGGCTGGCCATGTTTCTCACCCTGTTCATCATGGCGCCGGT
CTTCTCCCAGATCAACCAGACCGCCATCGGCCCTTACATGGAAGAAGAAATCGGCGCCGAAGAAGCCCTGCAACTGGCCG
CGGAACCGATCCGGGAATTCATGTTCAAACAGACCCGAGAAAAGGACCTGGAGCTTTTTCTCGGGCTGGCCCGGGCCCCC
CGGCCCCAGACCAAGGATGATGTCCCCACCCACATCCTGATTCCGGCCTTTATGATCAGCGAGCTGAAAACCGCCTTTAC
CATCGGTTTCGTGCTCTTTCTGCCCTTTCTGGTGATCGACATGGTGGTGGCCAGCGTACTGCTTTCCATGGGCATGATGA
TGCTGCCGCCGATTATGGTGGCGCTGCCCTTTAAAATCCTGCTCTTTGTCCTGGTGGACGGCTGGTATTTGATTGTGGGT
TCGTTAGTCAGAAGCTTCGGCTAG

Protein sequence : 
MFKVLLALAILLLPASALAQQGIPLPSIQIGIEEATSPREVSVLIELLLVFTVLAMAPAILLMMTCFTRLIVVFSFLRNA
IGTQQMPPNQVLVGLAMFLTLFIMAPVFSQINQTAIGPYMEEEIGAEEALQLAAEPIREFMFKQTREKDLELFLGLARAP
RPQTKDDVPTHILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMMMLPPIMVALPFKILLFVLVDGWYLIVG
SLVRSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-34 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-35 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-34 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-34 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-32 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-30 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-31 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-34 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-33 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-33 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-34 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 9e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-59 56
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG2494 Protein 4e-54 56
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-52 52
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG2016 Protein 4e-55 52
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG0519 Protein 5e-35 42
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG0394 Protein 3e-32 42
DaAHT2_1718 YP_003691029.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-34 42