Gene Information

Name : tnpB (PFREUD_24650)
Accession : YP_003687528.1
Strain : Propionibacterium freudenreichii CIRM-BIA1
Genome accession: NC_014215
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 652368 - 653255 bp
Length : 888 bp
Strand : -
Note : -

DNA sequence : 
GTGGACGGTCGCCGGCTCGGAGTCGAGCTCATCTGCAGACTGTTGCAGGTGGCTCCGAGCAGCTACTACGCCGCCAAGAC
CCGTGCGCCCTCTGCCCGTGCGCTGCGTGACGAGGAACTGATCCCGCAGCTGGTCGAGATCTGGGAGGCCAACTACCGCG
TCTACGGGGTCCGCAAGCTCTGGAAGGCTGCCCGGCGTGGGGGCATCATGATCGGCCGCGACCAGACTGCGAGGCTGATG
CGCGTCGCAGGGATCGAAGGTGCGAGGCGGTCGAAGCGGGTGAAGACCACGCGGCCGGACCCGGCGTCGTCGCGGCACCC
GGACCTGGTCAAGCGGGAGTTCACCGCGACGGCACCGAACCGGCTCTGGGTGACCGATCTGACATTCGTGCCCACCTGGG
CTGGCGTCGCCTACGTCTGCTTCATCATCGACGCGTTCTCCCGGATGATCGTGGGGTGGCGGGTCGCGTCACATATGCGC
ACCGAGATGGTCCTCGACGCGATCGAGATGGCGCGCTGGTCCCGAGGCGCCCACCATGAGGATCTGCGGTGTCACAGCGA
CGCGGGCTGTCAATTCACATCGATTCGCTACGGCGAACGCCTCGCAGAGATCGGTGCGACACCCTCGATCGGGACCGTCG
GCGATTCGTATGACAACGCCCTGGCCGAGACGGTGAACGGCTACTACAAGGCCGAGTTGGTTCGCGGGCCCACCCGCTCG
GGACCGTGGAAGACGGTCGAGGATCTCGAGCTCGCGACGCTCGGCTGGGTGCACTGGCACAACACGCAGCGCCTCCACGG
ATACCTCGGAGACGTCCCACCCGCCGAGTTCGAGAACGCGTTCTATGCTGTCCCCAACGACAGCAATCTGCTGATCGGAA
TCAAATAG

Protein sequence : 
MDGRRLGVELICRLLQVAPSSYYAAKTRAPSARALRDEELIPQLVEIWEANYRVYGVRKLWKAARRGGIMIGRDQTARLM
RVAGIEGARRSKRVKTTRPDPASSRHPDLVKREFTATAPNRLWVTDLTFVPTWAGVAYVCFIIDAFSRMIVGWRVASHMR
TEMVLDAIEMARWSRGAHHEDLRCHSDAGCQFTSIRYGERLAEIGATPSIGTVGDSYDNALAETVNGYYKAELVRGPTRS
GPWKTVEDLELATLGWVHWHNTQRLHGYLGDVPPAEFENAFYAVPNDSNLLIGIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 5e-43 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-55 49
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-41 48
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-42 48
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-48 48
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-52 47
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-52 47
Z1221 NP_286756.1 transposase Not tested TAI Protein 5e-53 47
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-53 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 8e-41 47
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-51 46
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 5e-52 46
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-51 46
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-53 46
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-53 46
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-51 46
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-53 46
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-51 46
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-54 46
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-54 46
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-53 46
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-53 46
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-34 45
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-49 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpB YP_003687528.1 transposase VFG1602 Protein 6e-50 44