Gene Information

Name : regX (PFREUD_18780)
Accession : YP_003688790.1
Strain : Propionibacterium freudenreichii CIRM-BIA1
Genome accession: NC_014215
Putative virulence/resistance : Virulence
Product : Response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2017862 - 2018539 bp
Length : 678 bp
Strand : -
Note : Probably forms part of a two-component regulatory system regX3/senX3

DNA sequence : 
GTGAGTCGCATTCTGATCATTGAGGACGAGGAGTCCTATCGGGACGCCATGTCGTTCATGCTTGACCGGGAGGGGTTCGC
CGTCGCGGCGGCGCCGGACGGCGAGCAGGGCCTGGCCGAATTCGATCGCAATGGGGCCGACCTGGTGCTTCTTGACCTCA
TGATGCCGGGGTTACCCGGTATTGAGGTGTGCAAGGCGCTGCGGCAGCGCAGCGATGTGCCGGTGATCATGGTGACCGCC
CGCGATTCCGAGGTTGACAAGGTGGTGGGCCTCGAGCTGGGCGCTGACGACTATGTGACCAAGCCGTTCAGCCAGCGTGA
GCTGGTGGCCCGCATCCGCGCCGTGCTGCGCCGCGGGCGTGCCGAGGAACTGGTGCCCGATGTGCTCGAGAGTGGCGATG
TGCGCATGGACGTGGAGCGCCACGAGGTGGCCGTGCGTGACGAGCCGGTGCGCCTGGCCCTGAAGGAATTCGAGCTGCTC
GAGCTGCTGTTGCGCAATTCCGGCCGTGTCATGTCGCGGGAGCAACTGATTGATCGGGTCTGGGGATCTGATTACGTGGG
GGATACGAAGACCCTTGATGTGCACGTCAAGCGCCTGCGCGCCAAGATCGAGCTCGATCCGTCACATCCGACGGCATTGG
TGACGGTGCGCGGACTCGGTTACAAATTCATGGGCTAA

Protein sequence : 
MSRILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLMMPGLPGIEVCKALRQRSDVPVIMVTA
RDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLRRGRAEELVPDVLESGDVRMDVERHEVAVRDEPVRLALKEFELL
ELLLRNSGRVMSREQLIDRVWGSDYVGDTKTLDVHVKRLRAKIELDPSHPTALVTVRGLGYKFMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
regX YP_003688790.1 Response regulator receiver HE999704.1.gene2815. Protein 9e-44 49
regX YP_003688790.1 Response regulator receiver AE000516.2.gene3505. Protein 6e-38 48
regX YP_003688790.1 Response regulator receiver NC_012469.1.7685629. Protein 2e-43 46
regX YP_003688790.1 Response regulator receiver CP001918.1.gene5135. Protein 2e-22 45
regX YP_003688790.1 Response regulator receiver CP000647.1.gene4257. Protein 1e-25 44
regX YP_003688790.1 Response regulator receiver BAC0533 Protein 1e-25 44
regX YP_003688790.1 Response regulator receiver AE016830.1.gene1681. Protein 6e-45 44
regX YP_003688790.1 Response regulator receiver CP000034.1.gene3834. Protein 1e-25 43
regX YP_003688790.1 Response regulator receiver CP001138.1.gene4273. Protein 7e-26 43
regX YP_003688790.1 Response regulator receiver NC_002695.1.915041.p Protein 1e-25 43
regX YP_003688790.1 Response regulator receiver NC_012469.1.7686381. Protein 1e-39 43
regX YP_003688790.1 Response regulator receiver BAC0197 Protein 4e-29 43
regX YP_003688790.1 Response regulator receiver NC_002952.2859905.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_003923.1003749.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_002745.1124361.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_009782.5559369.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_002951.3237708.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_002758.1121668.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_009641.5332272.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_013450.8614421.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_007793.3914279.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver NC_007622.3794472.p0 Protein 2e-40 43
regX YP_003688790.1 Response regulator receiver HE999704.1.gene1528. Protein 5e-25 42
regX YP_003688790.1 Response regulator receiver BAC0308 Protein 3e-27 42
regX YP_003688790.1 Response regulator receiver CP004022.1.gene3215. Protein 7e-32 42
regX YP_003688790.1 Response regulator receiver BAC0083 Protein 1e-26 42
regX YP_003688790.1 Response regulator receiver AE015929.1.gene1106. Protein 2e-29 41
regX YP_003688790.1 Response regulator receiver CP001485.1.gene721.p Protein 3e-31 41
regX YP_003688790.1 Response regulator receiver CP000034.1.gene3671. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
regX YP_003688790.1 Response regulator receiver VFG1386 Protein 4e-28 42
regX YP_003688790.1 Response regulator receiver VFG1389 Protein 9e-24 42
regX YP_003688790.1 Response regulator receiver VFG0596 Protein 3e-26 41