Gene Information

Name : Ndas_3473 (Ndas_3473)
Accession : YP_003681380.1
Strain :
Genome accession: NC_014210
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4162521 - 4163237 bp
Length : 717 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sco:SCO5035 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C1YQ59 ABC-type antimicr

DNA sequence : 
ATGAGCGGCACCGCCGCCGCGGAGGTCACGGGCACCCTGCTCACCGCCACCAGGCTCCGCAAGTACTTCGGTTCGACCGC
CGCGCTGAACGGGACGGACTTCAGCATCGACTCCGGCGAGGTCGTCGCCGTCATGGGCCCGTCCGGATCCGGCAAGTCCA
CGCTGCTGCACTGCCTGGCGGGCATCCTCGACCTCGACGGCGGCACCGTGCACTACGGCGGGCACGAGCTGACGGCCCTG
TCCGACGCCGAGCGCAGCAGGCTCAGACGCAGCGACTTCGGCTTCGTCTTCCAGTTCGGCCAGCTCGTCCCCGAGCTCAC
CTGCGTGGAGAACGTCGCGCTGGCCCTGCGCCTGACCGGCGTCGCCCGCAGGCGGGCGGAGGCCTGCGCGACGGAGTGGA
TGGCCCGCCTGGAGGTGGACGACGTCCGCGACAAGCGCCCCGGCCAGGTGTCCGGCGGGCAGAGGCAGCGGGTGGCCATC
GCGCGGGCGCTGGTGGCCGAGCCCCGGCTGCTCTTCGCCGACGAGCCCACCGCCGCGCTGGACTCGCTCGACGGGGAGCG
CGCCATGGAGCTGCTCACGGGCGCGGCCCGCGACACCGGGGCCGCGGTCGTCCTGGTCACCCACGACGTCCGGGTCGCCG
CCTACTCCGACCGCGAGGTCGTCTTCCGCGACGGCCAGGCCCTCGGCGACGCCACCGGGCCCACGGGGGCGACGTGA

Protein sequence : 
MSGTAAAEVTGTLLTATRLRKYFGSTAALNGTDFSIDSGEVVAVMGPSGSGKSTLLHCLAGILDLDGGTVHYGGHELTAL
SDAERSRLRRSDFGFVFQFGQLVPELTCVENVALALRLTGVARRRAEACATEWMARLEVDDVRDKRPGQVSGGQRQRVAI
ARALVAEPRLLFADEPTAALDSLDGERAMELLTGAARDTGAAVVLVTHDVRVAAYSDREVVFRDGQALGDATGPTGAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ndas_3473 YP_003681380.1 ABC transporter NC_008702.1.4606598. Protein 1e-27 44
Ndas_3473 YP_003681380.1 ABC transporter NC_012469.1.7686878. Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ndas_3473 YP_003681380.1 ABC transporter VFG2059 Protein 5e-18 44