Gene Information

Name : Ndas_2143 (Ndas_2143)
Accession : YP_003680071.1
Strain :
Genome accession: NC_014210
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2564703 - 2565617 bp
Length : 915 bp
Strand : +
Note : COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: tfu:Tfu_1661 ABC transporter membrane protein; PFAM: ABC transporter; SPTR: C1YMN4 ABC-type Mn2+/Zn2+ transporter permease; PFAM: ABC 3 transport family

DNA sequence : 
ATGGACGCGCTGACCGCGGTCGCGGAGTGGTTCACGGTGCCCCTGGGCTTCGACTTCGTCCGGCGCGCCCTGCTGGTCAG
CGTGGTCGCCGGAGTGGCGTGCGCCGTGCTGTCGTGCTGGATGACGCTGGTGGGCTGGTCGCTGATGGGCGACGCCGTCT
CCCACGCCGTCCTGCCCGGGGTGGTGCTGTCCTACCTGTTCGGGCTGCCCTTCGCCGTGGGCGCGCTGGTCTTCGGAGCC
GGGTCGGTCGCCCTGATCGGGGTGGTCAACCGCACCTCCCGGGTCAAGGAGGACGCCGTCATCGGGGTGGTCTTCACGGC
CATGTTCGCCCTGGGCCTGGTCCTGGTCTCGCGCGTGCCCAGCCAGACCGACCTGGGTCACATCCTGTTCGGCAACGTGC
TGGGGGTGTCGGACACCGACATCTGGCAGGTGCTCGTCCTGGCCGGGGTGGTGCTGGCGGTGGTCTGGTACAAGCACCGC
GACCTGACCCTGTACGCCTTCGACCCGGTCCACGCGCACGCGGTGGGCATCAACCCCCGCCTGCTGGAGACGCTGCTGCT
GGGGCTGCTGTCGGTCACGGTGGTGGTGGCCCTCCAGGCGGTGGGGATCATCCTGGTCGTGGCCATGGTCATCGTCCCCG
GAGCGACCGCCTACCTGCTCACCGACCGCTTCGAGCGGATGCTGGTCATCTCCGCTGCGGTGGCCGTGGCGGCGGCCGTG
GCGGGGGTGTTCCTCAGCTTCCACCTGAACGTGTCCACCGGCGGGGCGATCGTGCTGGCCCAGTCGTCGGCCTTCACCCT
GGCCTACCTGTTCTCGCCCCGCCAGGGCGTGCTCCGGCGGCGCCGCGCCGCACGGGGGGCCGGGGGCCGCGCGGTCGGCC
GTGGGCGGACCCGCCCCGCGAAGGAACCGTCCTAG

Protein sequence : 
MDALTAVAEWFTVPLGFDFVRRALLVSVVAGVACAVLSCWMTLVGWSLMGDAVSHAVLPGVVLSYLFGLPFAVGALVFGA
GSVALIGVVNRTSRVKEDAVIGVVFTAMFALGLVLVSRVPSQTDLGHILFGNVLGVSDTDIWQVLVLAGVVLAVVWYKHR
DLTLYAFDPVHAHAVGINPRLLETLLLGLLSVTVVVALQAVGIILVVAMVIVPGATAYLLTDRFERMLVISAAVAVAAAV
AGVFLSFHLNVSTGGAIVLAQSSAFTLAYLFSPRQGVLRRRRAARGAGGRAVGRGRTRPAKEPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-39 45
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-39 45
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-39 45
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-39 45
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-39 45
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-39 43
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-39 43
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-37 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-37 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-37 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-37 42
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ndas_2143 YP_003680071.1 ABC transporter BAC0442 Protein 4e-46 47
Ndas_2143 YP_003680071.1 ABC transporter BAC0352 Protein 2e-39 45
Ndas_2143 YP_003680071.1 ABC transporter BAC0441 Protein 2e-38 44
Ndas_2143 YP_003680071.1 ABC transporter BAC0351 Protein 7e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ndas_2143 YP_003680071.1 ABC transporter VFG0528 Protein 2e-39 45
Ndas_2143 YP_003680071.1 ABC transporter VFG0527 Protein 6e-38 42