Gene Information

Name : Ndas_2141 (Ndas_2141)
Accession : YP_003680069.1
Strain :
Genome accession: NC_014210
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2563025 - 2563972 bp
Length : 948 bp
Strand : +
Note : COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006127:IPR006128:IPR006129; KEGG: tfu:Tfu_1663 ABC transporter substrate-binding protein; PFAM: periplasmic solute binding protein; SPTR: C1YMN6 ABC-type metal

DNA sequence : 
GTGCCGAACTTTCAAGATGAGGCTTCTTCACACTCCTGGTCGGCGAAGCTCCCCGCCGCCTCCCTCGCCCTGGTCCTGGG
CCTGACCGCCTGTTCCTCCTCCGCCGGGCAGGAGCGCGACGACGGACGGCCCCTGGTCCTGACCACGTTCACCGTCCTGG
CGGACATGGCACGCAACGTCGCCGACGGACGCGTGGAGGTCGCCTCGCTCACCCGGCCCGGAGCCGAGATCCACGGCTAC
GAACCCACCCCCGACGACCTCGTCCGCGGCCGGGACGCCGACCTGATCCTGGAGAACGGGCTCGGCCTGGAGGCATGGTT
CAGCCAGTTCACCGAACGCGTGCAGGCCCCCACCGCCGTGCTCAGCGACGGTGTCGAGACCATCCCCATCTCCGCGGGGG
AGTACGAGGGCCAGCCCAACCCCCACGCCTGGATGTCACCCGACAACGCCCCCGTCTACGTCGACAACATCCGCGACGCC
CTCACCGAACTCGACCCCGAGGGCGAACGGGTCTACGCCGAGGCGGCCGAGGCCTACAAGGACGAGATCAGCGGGGTCGG
CGACTACCTGGAGGACGAACTCGCCGGGGTCCCCGACAGCTCCCGCGCCCTGGTCACCTGCGAGGGCGCCTTCTCCTACC
TGGCGCGCGACGCGGGGCTGACCGAGATGTACCTGTGGCCGGTCAACGCCGAGACCCAGGGCACCCCCCGGCAGACCGCC
GCCGTCACCGAGTTCGTCCGCGACAACCAGGTGCCCGCCGTCTTCTGCGAGAGCACCGTCAACGACGGCTCCCAGCGCTC
GGTGGCGCGCGAGACCGGCGCCGCCATGGGCCGGACCCTCTACGTCGACTCCCTGTCCGAGGAGGGCGGTCCCGTCCCCA
CCTACCTGGACCTGCTGCGCCACGACGCCGAGGCCATCGTGGCCGGGCTGCGGGGGGAGGAGCGGTGA

Protein sequence : 
MPNFQDEASSHSWSAKLPAASLALVLGLTACSSSAGQERDDGRPLVLTTFTVLADMARNVADGRVEVASLTRPGAEIHGY
EPTPDDLVRGRDADLILENGLGLEAWFSQFTERVQAPTAVLSDGVETIPISAGEYEGQPNPHAWMSPDNAPVYVDNIRDA
LTELDPEGERVYAEAAEAYKDEISGVGDYLEDELAGVPDSSRALVTCEGAFSYLARDAGLTEMYLWPVNAETQGTPRQTA
AVTEFVRDNQVPAVFCESTVNDGSQRSVARETGAAMGRTLYVDSLSEEGGPVPTYLDLLRHDAEAIVAGLRGEER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-73 55
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-73 55
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-73 55
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-73 55
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-73 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ndas_2141 YP_003680069.1 periplasmic solute binding protein BAC0349 Protein 1e-73 55
Ndas_2141 YP_003680069.1 periplasmic solute binding protein BAC0439 Protein 4e-65 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ndas_2141 YP_003680069.1 periplasmic solute binding protein VFG0525 Protein 1e-73 55