Gene Information

Name : M301_1012 (M301_1012)
Accession : YP_003673973.1
Strain : Methylotenera versatilis 301
Genome accession: NC_014207
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1135007 - 1135783 bp
Length : 777 bp
Strand : +
Note : KEGG: mmb:Mmol_0937 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGACTAGACCACTACTAAAATCTACACTCAATACAATCATTGCATTCGCTGCGCTGGTTTTAGCCAGCATGCTGATGTT
GCCTGGCACGGCATTGGCTGAAAATGGCATGCCGCTAGTGAATGCCTTACCTGCTGCGGGTGGTGGTCAAAACTACACCT
TGAGCTTACAAACGCTCATCTTACTGACTTCACTTACGTTTCTGCCAGCAGCTTTGCTAATGATGACTGGCTTTACACGC
ATCATTATTGTGTTGTCGTTGTTACGCCAAGCATTAGGTACGCAATCTGCACCGCCAAATCAGGTGATGGTGGGTCTAGC
TTTGTTTTTGACTTTCTTTGTGATGAGCCCAGTGATAGACAAAATTTACGTAGATGCCTATCAACCGCTTTCAGAAAACA
AGATTACCATGCAGGAGGCTATGGATAAAGGCGCAGCACCACTTAAAGCCTTTATGATGAAGCAAACACGTGAAGGCGAT
TTAGCGCTATTTGTGAATATGGCAAAAATCGAGAAGATTGAAACGCCAGATCAAGTGCCTTTATTAGTGTTAGTACCCGC
TTTTATGACCAGTGAGTTAAAAACCGCATTCCAAATCGGCTTTGCTATATTCATTCCATTTTTGATTATTGATATGGTAG
TTGCGAGTGTATTGATGGCGATGGGGATGATGATGGTTTCGCCCTCTATCGTGTCATTGCCATTTAAGTTGATGTTGTTT
GTATTGGTCGATGGCTGGCAGTTGTTGCTAGGTTCGCTGGTACAAAGTTTTTACTAA

Protein sequence : 
MTRPLLKSTLNTIIAFAALVLASMLMLPGTALAENGMPLVNALPAAGGGQNYTLSLQTLILLTSLTFLPAALLMMTGFTR
IIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENKITMQEAMDKGAAPLKAFMMKQTREGD
LALFVNMAKIEKIETPDQVPLLVLVPAFMTSELKTAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLF
VLVDGWQLLLGSLVQSFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-31 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-28 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-28 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-28 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-33 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 8e-21 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 8e-21 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-31 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-32 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-31 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-33 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-33 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-33 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-32 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-27 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-21 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-21 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-70 71
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-70 70
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG1259 Protein 8e-60 62
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG2016 Protein 6e-54 58
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG0394 Protein 5e-34 43
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-35 43
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG0519 Protein 5e-32 42
M301_1012 YP_003673973.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-35 41