Gene Information

Name : GC56T3_0597 (GC56T3_0597)
Accession : YP_003670225.1
Strain : Geobacillus sp. C56-T3
Genome accession: NC_014206
Putative virulence/resistance : Virulence
Product : transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 641780 - 642760 bp
Length : 981 bp
Strand : +
Note : PFAM: transporter permease; KEGG: gyc:GYMC61_0552 transporter permease

DNA sequence : 
ATGCGTAAGCGTGATGTGGGACTTGTGGCTGGGTTGGCATTGCTTCTTGTCATCATCGTGCCGCTCGGCGCTTGTTTCGG
GGATGTGAAAATCCCTGTTTCGCAAGTATGGGAGGCATTTTTCAACCGAAAGTCTTCCCTGAATGGGGAAATCGTGTGGG
AATATCGCTTGCCAAGGATATTGGCCGGGCTGTTTGTCGGCGCCAACCTCGCCGTATCCGGAGCGCTGTTGCAAGCCGTG
ACGCAAAACCCGCTTGCCGCTCCGAATGTCATTGGCATGACGGCTGGCGCCAGCTTATTTGCTGTGTTGGCGCTGCTGAT
CATTCCGCATTTTCCTGTCAGCGGCCTGCCGTTCGTCGCCTTTTTCGGGGCTCTCTTCGCCGGCCTTTGCGTGTATGCGT
TTGCTTGGAAGAAAGGAATGGATAAGGGCCGGTTTGCCCTATCGGGGATTGCTTTTGATGCCTTGTTTCAGGCCGTCATT
ACAGGGATTTTGGTTTTTGCGACCAAAGGAATTGATGCCGCGGTCATTTGGTTGGCGGGGAGTTTATGGGGACGGACATG
GGAACATGTTTTTCTCATCGCTCCTTGGTCAGTTGTTGGACTCGGACTCGCTTATCTTTGTTATCGCCGCATGAATGTCT
TGCAGCTGCACGATGATGTGGCCGCAAGCTTGGGAATGCGTGTTCAGGCGGCGCGTTTCCTGATCTTCCTCATCGCGGTC
GGCTTGTGTGGAAGCGCCGTAGCTGTATCGGGTCCGATCGGATTTGTGGGACTGGTCATCCCCCATCTTGCCCGTTTGTT
GACAAGGGCCGATTATCAGCGGCTCATTCCGGTCAGCGCCTTATTAGGAGCGATTTTGATGATCAGCGCGGATACGGCAG
GAAGAACCATCGCGGCGCCAATCGAAATTCCGGTCGGCATCTTAACGGCATTCATCGGTGCGCCGTATTTTCTCTTTCTG
CTTCGACGAGCAAAATTATAA

Protein sequence : 
MRKRDVGLVAGLALLLVIIVPLGACFGDVKIPVSQVWEAFFNRKSSLNGEIVWEYRLPRILAGLFVGANLAVSGALLQAV
TQNPLAAPNVIGMTAGASLFAVLALLIIPHFPVSGLPFVAFFGALFAGLCVYAFAWKKGMDKGRFALSGIAFDALFQAVI
TGILVFATKGIDAAVIWLAGSLWGRTWEHVFLIAPWSVVGLGLAYLCYRRMNVLQLHDDVAASLGMRVQAARFLIFLIAV
GLCGSAVAVSGPIGFVGLVIPHLARLLTRADYQRLIPVSALLGAILMISADTAGRTIAAPIEIPVGILTAFIGAPYFLFL
LRRAKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 2e-38 43
DIP0584 NP_938960.1 iron transport system membrane protein Virulence Not named Protein 2e-30 43
ciuC YP_005681254.1 Iron ABC transporter permease Virulence PiCp 4 Protein 4e-26 42
ciuC YP_005683345.1 Iron ABC transporter permease Virulence PiCp 4 Protein 4e-26 42
ciuC YP_003783390.1 iron ABC transporter permease Virulence PiCp 4 Protein 4e-26 42
ciuC YP_005685431.1 Iron ABC transporter permease Virulence PiCp 4 Protein 4e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GC56T3_0597 YP_003670225.1 transporter permease BAC0163 Protein 1e-38 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GC56T3_0597 YP_003670225.1 transporter permease VFG1043 Protein 1e-38 43