Gene Information

Name : GC56T3_2849 (GC56T3_2849)
Accession : YP_003672368.1
Strain : Geobacillus sp. C56-T3
Genome accession: NC_014206
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2989390 - 2990067 bp
Length : 678 bp
Strand : -
Note : KEGG: btk:BT9727_0482 response regulator; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver

DNA sequence :

TTGAAGCTGCTTGTTGTCGAGGATCACCACGACTTGCGGGAGGCTATGATCGAGATGCTGGCGGATGAGTTTGAGGTTGA
TGGGGCATGTGACGGCGATGAAGGGTTGTTTTTAGCGCAGCAAAACATTTACGACGCCATCATCTTGGACGTTATGCTTC
CCGGCATCGATGGTTTTTCCATCGTCCGTCGTCTTCGTGAAGACGGAATCGAAACGCCGGTGTTGTTTCTGACGGCGAGA
GACTCGCTTGAAGATCGGGTGAAGGGACTTGATTTTGGCGGGGACGATTACTTGGTGAAGCCGTTTCAGTCTCCGGAACT
GAAGGCGCGTCTGCGGGCTCTTTTGCGGCGCAGCGGCGCCCTGACGACGAAACAGACGATCCGCTACCGCGGCATCGAAT
TGTTTGGCAAAGAAAAAGGAGTCGTGGTTGACGGTCAACCGCTGAAATTGACCAGCAAACAGTACGAGCTTTTGGAATAT
CTCGTTCATAACCAAGGCGTCATTTTAACGAAGGAACAAATTTTTGACCGCATTTGGGGATTTGACTCTGATACGACGAT
CTCCATTGTCGAAGTGTTCGTTCATCAGCTGCGGAAAAAGCTTGAGCCGTTTGGCTATCATGCAGATATTCAAACTGTCC
GCGGCATCGGCTACATGCTGGTGCGGGAGCAGGAGTGA

Protein sequence :

MKLLVVEDHHDLREAMIEMLADEFEVDGACDGDEGLFLAQQNIYDAIILDVMLPGIDGFSIVRRLREDGIETPVLFLTAR
DSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSGALTTKQTIRYRGIELFGKEKGVVVDGQPLKLTSKQYELLEY
LVHNQGVILTKEQIFDRIWGFDSDTTISIVEVFVHQLRKKLEPFGYHADIQTVRGIGYMLVREQE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	5e-32	44
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	2e-31	44

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	BAC0125	Protein	1e-32	42
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	BAC0111	Protein	2e-31	42
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	HE999704.1.gene1528.	Protein	9e-32	41
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	BAC0197	Protein	1e-29	41
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	BAC0347	Protein	8e-29	41
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	NC_002516.2.879194.p	Protein	2e-27	41
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	BAC0638	Protein	1e-28	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	VFG0596	Protein	2e-32	44
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	VFG1386	Protein	8e-36	44
GC56T3_2849	YP_003672368.1	winged helix family two component transcriptional regulator	VFG1389	Protein	2e-28	42