Gene Information

Name : GC56T3_0230 (GC56T3_0230)
Accession : YP_003669876.1
Strain : Geobacillus sp. C56-T3
Genome accession: NC_014206
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 258925 - 260109 bp
Length : 1185 bp
Strand : -
Note : PFAM: integrase; KEGG: saw:SAHV_2013 hypothetical protein

DNA sequence :
TTGGCTTCGTTCCAAAAGTATAAAACGAAAGACGGCGAGAAATGGATGTTTAAAATGGATGTCGGGATCGATCCTGCTAC
TGGGAAGCGCAAAACAACGACACGCCGAGGTTTTAAAACCAAAAAAGAAGCGCAGCTGGCTGCGGCCAAATTGTACGACG
AAATAAATAACGGAGGCTACGTGAAGGACACGAATATACTATTCAAGGATTTCGCACAAGAATGGTTAGCAATATACAGC
GAAACCGCAAAAATAAGCACGATTCGCGCCAGGAAACATGAACTGGGGCACTTGATGCGTTACTTCGGTAACTTGAAGCT
AAAGGATGTTACACGAAAAATGTATCAAGACATGCTCTTGGATCTCAAAAAAAAAGGATATGCTGACAACACCCTAGACG
GAATTCATACAACAGGGAGAATGATTTTTAAAAAAGCGATGGAATTGGAATTGATAAACTCTAATCCTACGGAATACGCC
AAGGTGCCTAAGCAGAAAAAAACAGTGGAGGACATTGAAAGCGGCAATAAAGACATGAAATTTTTAGAAAAGCATGAGTT
AGCCCTCTTTTTGAAAACAGCCCAAGAACACGGGCTAGCTATGGATTATGTCGTGTTTTCAACCTTGGCATACACTGGTA
TGCGGCTAGGTGAATTACTGGCCCTTCAGTGGAAGGATATTAACTTTAAAGAACATACCATTGCGATTACAAAAACGTTG
TACAGCCCTAGAAACAACGAAAGATATTATCAATTACTGCCCCCTAAAACACAGGGATCCATTCGAACCATCAAAGTCGA
TCCAAACATCATTTCACTTCTAAAGAAGCACAAAGCTGAGCAAAATGAAATCAAATTGCGAATGGGAGAGTTATATCACG
ATCTGGGTTTCGTGTTTGCGCGGCCAAGTGGATTTCCTGAAGTGCCTAAAAAAATTGAAATCAGAATGAAGCGACTACTG
AGAATCGCAAACATTCATAAACATGTAACACCTCACTCCCTTCGGCACACTCATACTAGTTTACTTATTGAAGCAGGAGT
GGGAATCAAAGAAATCCAGCAGCGCCTCGGCCATGCAGATATCGAAACAACCATGAACATTTATGCGCATCTAACAAAAG
ATTTGGAAGAAAGAGCTTCGCAGAAATTTAGCGAGCTTATGAGCAACTTCATCAAAAATTTGTGA

Protein sequence :
MASFQKYKTKDGEKWMFKMDVGIDPATGKRKTTTRRGFKTKKEAQLAAAKLYDEINNGGYVKDTNILFKDFAQEWLAIYS
ETAKISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLLDLKKKGYADNTLDGIHTTGRMIFKKAMELELINSNPTEYA
KVPKQKKTVEDIESGNKDMKFLEKHELALFLKTAQEHGLAMDYVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKTL
YSPRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVFARPSGFPEVPKKIEIRMKRLL
RIANIHKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIETTMNIYAHLTKDLEERASQKFSELMSNFIKNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int NP_375136.1 hypothetical protein Not tested vSa4 Protein 2e-69 45
int NP_372552.1 integrase Not tested vSa4 Protein 2e-69 45
SAB1912 YP_417371.1 integrase Not tested SaPIbov2 Protein 2e-69 44
SAOV_2065 YP_005737508.1 integrase Not tested SaPI2 Protein 2e-70 44
int ABJ97306.1 integrase Not tested SaPI2 Protein 3e-71 44