Gene Information

Name : GC56T3_0171 (GC56T3_0171)
Accession : YP_003669821.1
Strain : Geobacillus sp. C56-T3
Genome accession: NC_014206
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 187265 - 188056 bp
Length : 792 bp
Strand : -
Note : KEGG: gka:GK0194 ferrichrome ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA

DNA sequence : 
ATGGTCCGCCTATACGCCGAGGAGTTGACCGTCCGCTACGATGACCGGACGATTTTCGAACGCTTGTCCGTCCGCATTCC
CGACCGACAAATCACAGCCATTATTGGACCAAACGGATGCGGAAAATCGACGCTGCTCAAGACGTTGACGCGCATCATTT
CCCCGCAGTCCGGCGCCGTCATTTTGGACGGCCGGGCCATTTCGCAACAGCCAACGAAAGAACTGGCGAAAAAAATAGCT
ATTTTGCCGCAGACGCCGGAAGCGACAAGCGGATTGACCGTCGCTGAGCTCGTCTCGTACGGCCGCTTCCCTTATCAAAG
AGGATGGGGCCGCCTAACGAAACAAGATTACGAAGCAATCGACTGGGCGCTTGCCGTAACGAAAACAGCCGATTTGAAAC
ACCGGCCGGTTGACGCCCTCTCCGGCGGACAGCGGCAGCGCGTCTGGATCGCCATGGCGCTCGCTCAAGAGACGGACATC
ATCTTTTTGGACGAACCGACGACGTATTTGGACATCGCCCACCAGCTCGAGGTGCTCGAGCTGCTTGAACGGCTGAACAA
AGAAGAAGGGCGGACAATTGTGATGGTGCTCCATGACATTAACCAAGCGGCGCGGTTTTCCGACTATGTGATCGCCATGA
AGGCGGGCACGATCGTCAAAGCCGGGCCGAGCGAAGACGTCATTTGCCGCGATGTGCTTCGCGACGTGTTTGGCATTGAC
GCTGACATCGGCCGCGACCCGCGGACGAACAAACCGATTTGCTTCACTTATCAACTGCTTAGGGAGGCTTGA

Protein sequence : 
MVRLYAEELTVRYDDRTIFERLSVRIPDRQITAIIGPNGCGKSTLLKTLTRIISPQSGAVILDGRAISQQPTKELAKKIA
ILPQTPEATSGLTVAELVSYGRFPYQRGWGRLTKQDYEAIDWALAVTKTADLKHRPVDALSGGQRQRVWIAMALAQETDI
IFLDEPTTYLDIAHQLEVLELLERLNKEEGRTIVMVLHDINQAARFSDYVIAMKAGTIVKAGPSEDVICRDVLRDVFGID
ADIGRDPRTNKPICFTYQLLREA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-59 50
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-60 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-60 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-51 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-51 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-51 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-51 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-52 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-55 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GC56T3_0171 YP_003669821.1 ABC transporter BAC0164 Protein 2e-55 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GC56T3_0171 YP_003669821.1 ABC transporter VFG0925 Protein 3e-52 48
GC56T3_0171 YP_003669821.1 ABC transporter VFG1042 Protein 2e-55 44