Gene Information

Name : GC56T3_1542 (GC56T3_1542)
Accession : YP_003671126.1
Strain : Geobacillus sp. C56-T3
Genome accession: NC_014206
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1620632 - 1621915 bp
Length : 1284 bp
Strand : +
Note : KEGG: gka:GK1972 transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit

DNA sequence : 
ATGGCGTTGGTCGTGTTTATCGGATCGCTGTTAGGAGTCATGGCGCTCGGGATGCCGATCGCGTTTGCGCTCTTGGTCAG
CGGCGTCGCCCTGATGTTTTATTTGGACATTTTTGATACGCAAATCATCGCGCAAAACTTGATCAGCGGCGCGGACAGCT
TTCCGCTGATGGCGATTCCGTTTTTTATGCTTGCCGGGGAGCTCATGAACGCCGGCGGCATTTCGAAGCGGATCATCCGC
TTTGCCATGGCGCTTGTCGGCCATATCCGCGGCGGGCTGGGGTATGTCGCCATTATCGCGAGCGTGCTGTTTGCCGGTTT
GTCGGGTTCGGCGGTCGCCGACACGGCGGCGCTTGGGGCCATTCTCATCCCAATGATGGTCAAAGCCGGATACAACCGCA
ACCGGTCGGCTGGCCTCATCGCCGCCGGCGGCATTATCGCGCCGATCATCCCGCCGAGCATCCCGATGATCATCTTTGGG
GTCACAAGCGGCGTGTCGATCACGAAGCTGTTTATGGCCGGCATTGTTCCGGGGATTTTGCTTGGGATTTCTTTGGCGGT
TTGTTGGTGGTGGGTGACCCGGAGAGATCAAGTGGACGTGCTTCCGCGCCAATCGGCGAAAGACATTTGGCGGGCGACCC
GCGAGGCGTTTTGGGCGTTGCTGCTGCCGGTGATCATTGTCGGCGGGCTGCGCGGAGGGGTGTTTACGCCGACCGAGGCG
GCGGTGGTGGCCGCGTTTTACTCCTTGATTGTCGGCTTGTGCATTTACCGTGAGCTGAAGGTGAAAGACTTGTTCCACGT
GCTCGTGGCCGCGGCGAAAACGACAAGCGTCGTCATGTTTTTGGTGGCGGCGGCCATGGTGTCGGCCTGGCTCATTACGG
TCGCCAACATTCCGGCGATCGTTACAGATGTGCTTGCGCCGTTTATCGATCATCCGTTGGCGCTGCTTTTGGCCATTAAC
GCGTTGGTGCTGTTGGTCGGAACGGCGATGGATTTGACGCCGACGGTGCTCATTTTGACGCCGGTGTTGATGCCGATTAT
TCAAAAAGCGGGAATCGACCCGGTGTACTTCGGGGTTCTGTTTATCCTAAACAACTGCATCGGGCTGCTCACGCCGCCGG
TCGGCACAGTGCTGAACGTCGCCTGTGGGGTGGCGAAAATCAACATGGAAGACATTATGAAAGGGGTTTGGCCGTTTTTG
CTTGTGGAGACGCTTCTGTTGCTTTTGTTGATTTTCTTCCCGTCTCTCGTCACTGTGCCGCTCGGATGGTTTACGGGCAG
TTGA

Protein sequence : 
MALVVFIGSLLGVMALGMPIAFALLVSGVALMFYLDIFDTQIIAQNLISGADSFPLMAIPFFMLAGELMNAGGISKRIIR
FAMALVGHIRGGLGYVAIIASVLFAGLSGSAVADTAALGAILIPMMVKAGYNRNRSAGLIAAGGIIAPIIPPSIPMIIFG
VTSGVSITKLFMAGIVPGILLGISLAVCWWWVTRRDQVDVLPRQSAKDIWRATREAFWALLLPVIIVGGLRGGVFTPTEA
AVVAAFYSLIVGLCIYRELKVKDLFHVLVAAAKTTSVVMFLVAAAMVSAWLITVANIPAIVTDVLAPFIDHPLALLLAIN
ALVLLVGTAMDLTPTVLILTPVLMPIIQKAGIDPVYFGVLFILNNCIGLLTPPVGTVLNVACGVAKINMEDIMKGVWPFL
LVETLLLLLLIFFPSLVTVPLGWFTGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-51 43
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-51 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 8e-52 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GC56T3_1542 YP_003671126.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 5e-52 43