Gene Information

Name : XNC1_p0010 (XNC1_p0010)
Accession : YP_003662299.1
Strain :
Genome accession: NC_014170
Putative virulence/resistance : Unknown
Product : putative DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : 5.99.1.2
Position : 4931 - 7120 bp
Length : 2190 bp
Strand : -
Note : -

DNA sequence :
ATGGACCTTTATATCTGCGAAAAGCCTTCTCAGGCCAAAGACTTGGCAGGAGTAATGAAAGCCTCCCAAAGGGGAGATGG
ATTTATCCATGATGGAGGAAACAGAGTTATTACCTGGGCCTTCGGCCACCTTCTGGAATTGTATATGCCAGATGACTATG
ACGAACGATATAAGTCATGGTCACTAGAGACTCTTCCCATTGCTCCTGACGCCTGGCGGTACAACGTTCGCAAGAGTGCG
CTAAAGCAGTACAAAATCGTTGAAGGCCTAGTCAAAAAAGCAAGTACCATCTACATCTCTACCGACTTCGACCGCGAAGG
TGAAGCTATCGCTCGTTCGCTTTTGGATCAATTCCGCTACTCAGGTCCTATTCGTCGTGTTTGCTTGACTGCACTCGATG
AGTCGAGCATTAAGAAAGCGCTAAATAACGTTAAGGACGGCAAAGAAACTGTCTCGCTATACTACGCTGCACTAGCAAGG
CAACGCGCAGACTGGCTGGTGGGAATGAACGTAAGCCGACTCTATACAGTATTGGCGCGAGATGTAGGTTTCAATCATAC
CCTCCACGTAGGTCGGGTCATTACACCTACCGTCGCTCTCGTGTGTCAACGAGATCGAGAGATCGCGGGTTTCACACCAT
CCCCATACTGGACTCTGGGCGTGAACGTATCCGTGCAGAATGGTCAGTTTGCCGCTCAGTGGATACCGCCAGAGGAGTGT
AGTGACGAACAAGGCCGATGTATCAATAAGGCCTATGCCGAGCAGGTATCCTCTCAGGTCAACGGTGCCAATGCAGTTAT
CAGCAAGGCAGAGACAAAACCAGGCAAAGAGTCTGCTCCCCTTCCCTTCGATCTGACTTCATTGCAGCAATACGCAAGTA
AACGATGGGGATATACTGCTCAGCAGGTGCTTGATGCAGCCCAAGCTCTGTATGAAACACACAAAGCAACAACCTACCCT
CGTACCGACAGTCGCTACCTGCCAGAGAGCCAAAAGGAAGACATTCCTGACATCCTACAGGCGCTTATTTTGTCCGATCA
GAACGTCTCAGGGCTGGTAGCTGGCGCAGATCCTCACCGCAAAGCCAGAGTATTCAATGACTCTAAAGTGACCGCGCACC
ACGCGATCATTCCAACCCCAGCAAGAACAGACATCAGTGCCATGTCTGAGATCGAGTTAAATCTCTACGACGCCATACGT
CGTTTCTACATCGCGCAGTTCTACAGTGAGTTCGAGTTCACCAAAACCTCCATCGAGGTGCAGTGTGGACGTCACCTCTT
TGCAGCTTCCGGTAAGACTCCGACCAAACAAGGCTGGAAGGTTTTGTTTGCTTCTGACAGCGAAAGCAGCCCCAAGGATG
AAGGAGAAGATACCGACGCGCCGGTTGAACAGGAGAAGCTCCCCAGGGTTAGTCAGGGCGAACCTGCCTTGCTCAATGGT
ACTGAGCTGATGAACAAAATGACGCGGCCAGCACCACACTTTACAGAAGCCACATTACTTGCCGCGATGGAGAACATTGC
CCGGTTTGTGACTGAGGAGAAGTTTAAGCAGATCCTCAAAGACACCGCCGGTCTGGGCACTCCAGCAACACGCGCCAGCA
TCATCCAGGGAACTGTAGATAAAGGCTATTTCAAGCGTCAGAAAAAGGTACTGCTTGCAACAGATAAAGCTCATGCACTT
ATCGCTGTGCTTCCACCAGCAATCAAGTCACCTGGCATGACTGCGGCCTGGGAACAAGAGCTTGAAAAAGTCGCCACTGG
CTCCGGAAACATGTCTGTCTTCATGAAACAGATTTCCACCTGGATTTGCCAGATGGTCGATCAGCTCAAAGTGGCCGCAC
CGGTTCTGACCAAAGAAGGCAGTGCGATGGCTAAGGCATTTGAAGGCGCGAAACCTCCCTCACACGAATGCTTTAACTGT
GGTGGAGAGATGCACCGAATCAAAGGTAAAAACGGCTTCTTCTGGGGTTGTCAGAACGAGGCTTGTAAAAAGACATTCCC
TGATAATAGAGGTAAACCAGAGAAGCGCATCGCTGCGGAGGATTGCCCAGACTGCCCAGATTGCGGTAGCCCGATGCGCC
TTAGAAAAGGGAAAGCACCAGGTAAAAAACGAGCCTCTAAGTTTTGGGGTTGCACCGCTTATCCAGACTGCAAAGGCACA
ATGCCTTTCAAAAAATCAGACTTAGAATGA

Protein sequence :
MDLYICEKPSQAKDLAGVMKASQRGDGFIHDGGNRVITWAFGHLLELYMPDDYDERYKSWSLETLPIAPDAWRYNVRKSA
LKQYKIVEGLVKKASTIYISTDFDREGEAIARSLLDQFRYSGPIRRVCLTALDESSIKKALNNVKDGKETVSLYYAALAR
QRADWLVGMNVSRLYTVLARDVGFNHTLHVGRVITPTVALVCQRDREIAGFTPSPYWTLGVNVSVQNGQFAAQWIPPEEC
SDEQGRCINKAYAEQVSSQVNGANAVISKAETKPGKESAPLPFDLTSLQQYASKRWGYTAQQVLDAAQALYETHKATTYP
RTDSRYLPESQKEDIPDILQALILSDQNVSGLVAGADPHRKARVFNDSKVTAHHAIIPTPARTDISAMSEIELNLYDAIR
RFYIAQFYSEFEFTKTSIEVQCGRHLFAASGKTPTKQGWKVLFASDSESSPKDEGEDTDAPVEQEKLPRVSQGEPALLNG
TELMNKMTRPAPHFTEATLLAAMENIARFVTEEKFKQILKDTAGLGTPATRASIIQGTVDKGYFKRQKKVLLATDKAHAL
IAVLPPAIKSPGMTAAWEQELEKVATGSGNMSVFMKQISTWICQMVDQLKVAAPVLTKEGSAMAKAFEGAKPPSHECFNC
GGEMHRIKGKNGFFWGCQNEACKKTFPDNRGKPEKRIAAEDCPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGT
MPFKKSDLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 2e-141 44
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 7e-133 43
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 5e-131 43
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 2e-136 43
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 1e-140 42
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 5e-131 41
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 5e-131 41
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 4e-131 41