Gene Information

Name : Srot_2379 (Srot_2379)
Accession : YP_003659655.1
Strain : Segniliparus rotundus DSM 44985
Genome accession: NC_014168
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2406989 - 2407741 bp
Length : 753 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: mav:MAV_5093 transposase

DNA sequence : 
GTGATCCGGTTCGTGGACGCGAACCGGGAGCGGTTCGGGGTCGAGCCGGTCTGCCGGGTGCTCAAAGGGCACGGCGTGAA
GATCGCCCCGCGCACCTACTGGGCCGCCAAGTCCAGGCCCGCGTCCGCCCGCTCGGTCCGCGACCAGGAGCTCAAGGCTC
TGATCACGGACGTGTTCGAGGACCGGCTCAAAGGCCGGGGCCTCGCGGGGGCCAGGAAGGTCTACCACCTTCTCAAACGC
GACGGGCATCAGGTCGCCCGCTGCACGGTCGAGCGGTTGATGCGCGAGCTGGGCTTGAGAGGCGCGTCGCGGGGCGACGG
CAAAGTCCGCACCACCCGGCGGGACGACTCGGCTCCCAGGCCCCCGGACCTGGTCAAGCGCCAGTTCAAGTCGGAGGCCC
CGAACCGTTTGTGGGTCGTGGACTTCACCTATGTCGCGACCTGGTCGGGCATGGGTTTCACGGCGTTCGCCACCGACGTC
TACTCGCGGCGGGTCGGCGGTTGGAGAACGGCCTCGCGCATGCCCGTCGAGCTCCCGTTGGACGCTTTGGAGATGGCCCT
GTGGGTCTGTGAGAGAGCTGGTCAGAGCCTTGACGGGCTCATCCATCACAGCGACGCGGGATCGCAATACACTGCGATCC
GCTACGCCGAGCGCCTCGCCGACGCGGGCGCCCTCGCGTCCATCGGGACGGTCGGCGACTCCTACGACAACGCCCTCGCC
GAATCCGAGATCGGCCTCTACAAGCGCGAATGA

Protein sequence : 
MIRFVDANRERFGVEPVCRVLKGHGVKIAPRTYWAAKSRPASARSVRDQELKALITDVFEDRLKGRGLAGARKVYHLLKR
DGHQVARCTVERLMRELGLRGASRGDGKVRTTRRDDSAPRPPDLVKRQFKSEAPNRLWVVDFTYVATWSGMGFTAFATDV
YSRRVGGWRTASRMPVELPLDALEMALWVCERAGQSLDGLIHHSDAGSQYTAIRYAERLADAGALASIGTVGDSYDNALA
ESEIGLYKRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-48 49
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-37 49
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 1e-34 48
Z1221 NP_286756.1 transposase Not tested TAI Protein 8e-41 47
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-41 47
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-40 47
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-41 47
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-40 47
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-42 47
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 5e-40 47
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-40 47
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-42 47
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-41 47
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-42 47
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-42 47
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-40 47
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-39 46
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-39 46
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-36 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-40 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-40 45
CDC7B_2035 YP_005163476.1 transposase-like protein Not tested Not named Protein 2e-35 45
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-41 44
CDCE8392_1985 YP_005134516.1 transposase-like protein Not tested Not named Protein 2e-29 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Srot_2379 YP_003659655.1 integrase catalytic subunit VFG1602 Protein 9e-40 46