Gene Information

Name : Srot_1340 (Srot_1340)
Accession : YP_003658636.1
Strain : Segniliparus rotundus DSM 44985
Genome accession: NC_014168
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1321424 - 1322128 bp
Length : 705 bp
Strand : +
Note : KEGG: mav:MAV_4425 ABC-type transporter ATPase component; PFAM: ABC transporter; SMART: ATPase AAA

DNA sequence : 
ATGATCGAACTGCGCGAGGTGACCAAGCGATACCGGATCGGCAGCGAAGAGGTCCGGGCCCTCGACGGCGCCAGTCTCGA
CCTCGCGCCTGGCTCCCTCGTGTCCATGGCGGGCCCGTCCGGCTCGGGCAAGAGCACCTTGTTGCACATCCTCGGCGCGC
TTGATTCGCCAGACTCTGGATCCGTCGTGTTCGAGGGACGCGACATCACGGGCCTGTCCGAGCCCGAGCAGGCCGAACTG
CGTCTGCATCGCATCGGGTTCGTCTTCCAGTTCTTCAACCTGTTGCCCACCATGTCAGCGTGGGAGAATGTGGCGCTGCC
AAAGTTGCTCGACGGCGCGAGCCTCAAATCTGCGCGCGCCGACGCGATGGCCCTGTTGCAGCGCGTCGGCCTGGGACAGC
GCGCCGATCACCGCCCCGCCGAGCTTTCCGGGGGGCAAATGCAACGAGTGGCCATCGCGCGGTCCCTGATGATGGACCCG
GTTCTGCTGCTCGCCGACGAGCCGACGGGGAACTTGGACTCGAAAACGGGCGATGAGGTGATGGCGTTGCTGGCCGAGTT
CGCCCACGACAAGGAGAACGCCAGGACCGTTGTCCTGGCGACGCACAACCTCGAGGCGGCCGCTGCCACGGATCGGACCA
TCTTTTTGCAGGACGGCTCCATCGCCTCGGATGTGTCCCGCCGGGTCGAAGCGAGCGCCCCGTGA

Protein sequence : 
MIELREVTKRYRIGSEEVRALDGASLDLAPGSLVSMAGPSGSGKSTLLHILGALDSPDSGSVVFEGRDITGLSEPEQAEL
RLHRIGFVFQFFNLLPTMSAWENVALPKLLDGASLKSARADAMALLQRVGLGQRADHRPAELSGGQMQRVAIARSLMMDP
VLLLADEPTGNLDSKTGDEVMALLAEFAHDKENARTVVLATHNLEAAAATDRTIFLQDGSIASDVSRRVEASAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Srot_1340 YP_003658636.1 ABC transporter NC_008702.1.4606598. Protein 9e-39 48
Srot_1340 YP_003658636.1 ABC transporter NC_012469.1.7686878. Protein 3e-46 45
Srot_1340 YP_003658636.1 ABC transporter CP001581.1.gene598.p Protein 2e-37 44
Srot_1340 YP_003658636.1 ABC transporter CP001581.1.gene798.p Protein 3e-36 42