Gene Information

Name : Srot_1262 (Srot_1262)
Accession : YP_003658563.1
Strain : Segniliparus rotundus DSM 44985
Genome accession: NC_014168
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1231740 - 1232426 bp
Length : 687 bp
Strand : +
Note : KEGG: gbr:Gbro_1396 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver

DNA sequence : 
ATGGACATCCTTGTTGTCGATGACGACCGTGCCGTGCGCGACTCTTTGCGCCGTTCGTTGTTGTTCAACGGTTACGCGGT
GCGGACGGCGGAGAACGGCGCCGAGGCTTTGTCACAGGTTTTGGAGTGCCGCCCCGACGCCATGGTGCTCGATGTGATGA
TGCCGGGCCTTGACGGGCTTGAAGTGTGCCGTCGGCTCCGCAGCGCCGGCGACGACTTGCCGATCCTGGTGCTCACCGCG
CGCGACACGGTCTCCGAGCGGGTCGCCGGGCTCGACGCCGGCGCGGACGACTACCTGCCGAAGCCTTTCGCCCTCGAAGA
GCTCCTCGCCAGGGTGCGGGCGCTGCTCCGCCGGCGCACTCCCCAAGCGGAGCCCGGCGCTGAGACATTGGCCTTCCTCG
ACCTCAGCCTGGACCCCGCAACGCGCGACGTGCGCAGGGGAGACCGCGAGATCAGCTTGACCCGGACCGAGTTCGCCCTG
CTGGAAATGCTCATGGAGAATCCGAGACGAGTGCTCACGCGCACCCGGCTGCTCGAAGAAGTCTGGGGATACGACTTTCC
GACCTCGGGCAACGCGCTTGAGGTGTACATCGGCTACCTCCGCAGGAAAACAGAGGCCGATGGCGAGAACAGGCTCATCC
ACACCGTTCGAGGCGTTGGCTACGTCTTGCGCGAGACTCCTCCGTAA

Protein sequence : 
MDILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVMMPGLDGLEVCRRLRSAGDDLPILVLTA
RDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRTPQAEPGAETLAFLDLSLDPATRDVRRGDREISLTRTEFAL
LEMLMENPRRVLTRTRLLEEVWGYDFPTSGNALEVYIGYLRRKTEADGENRLIHTVRGVGYVLRETPP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-28 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Srot_1262 YP_003658563.1 transcriptional regulator BAC0083 Protein 1e-30 48
Srot_1262 YP_003658563.1 transcriptional regulator BAC0125 Protein 1e-28 45
Srot_1262 YP_003658563.1 transcriptional regulator HE999704.1.gene1528. Protein 8e-34 45
Srot_1262 YP_003658563.1 transcriptional regulator BAC0638 Protein 5e-24 45
Srot_1262 YP_003658563.1 transcriptional regulator BAC0197 Protein 1e-23 43
Srot_1262 YP_003658563.1 transcriptional regulator CP000034.1.gene3671. Protein 2e-27 43
Srot_1262 YP_003658563.1 transcriptional regulator BAC0347 Protein 4e-25 42
Srot_1262 YP_003658563.1 transcriptional regulator BAC0111 Protein 1e-27 42
Srot_1262 YP_003658563.1 transcriptional regulator BAC0308 Protein 2e-27 42
Srot_1262 YP_003658563.1 transcriptional regulator NC_002516.2.879194.p Protein 1e-19 41
Srot_1262 YP_003658563.1 transcriptional regulator AE000516.2.gene3505. Protein 6e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Srot_1262 YP_003658563.1 transcriptional regulator VFG1390 Protein 1e-68 79
Srot_1262 YP_003658563.1 transcriptional regulator VFG1389 Protein 5e-40 55
Srot_1262 YP_003658563.1 transcriptional regulator VFG1386 Protein 2e-41 48
Srot_1262 YP_003658563.1 transcriptional regulator VFG0596 Protein 1e-28 42