Gene Information

Name : Arnit_0537 (Arnit_0537)
Accession : YP_003654708.1
Strain : Arcobacter nitrofigilis DSM 7299
Genome accession: NC_014166
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 524913 - 526682 bp
Length : 1770 bp
Strand : +
Note : COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR011527:IPR 003593:IPR001140; KEGG: wsu:WS1265 ABC transporter ATP-binding/permease protein; PFAM: ABC transporter related; ABC trans

DNA sequence : 
ATGAAAAAGAATCAATTTACCTCTATTTCTACTATTTATAAACTCACTTTAGAATTAGCAGGTGATAAAGAAAATGAGTT
TAAAAAAAGTTTGATATATTTTACCTTGGCTTTTGTATCACAAGGTCTTGCTTTTGGTATGTTTTATCCTATGTTAAAAT
CAATGTTTGCAGAGACATTTATTTTATCAAATACTTTTTTATATTTAGGAGTAATGGCTTTGTTTAGTGTCATATCATTT
TGGGCAAAATGGAAAGGGCATGATTTTGATTATACGGGTAATATAGTAGAAATAAGTCATGATATAAGAACAAAACTCGG
CGTTGCACTTAGAAAAATGCCTTTAGAAAAACTTTCAAGGTATAAAACTGGAGAATTAAATTCAATCTTTTCAAGTAATG
TGGATGAGTCTGTTTTACACATGGGGATGATTGCTTCTATGTTTTTACAAATCATAATTGTACCAATAACCATTGTTATT
TTTACTTTCTTCGTTGACTATCGATTGGCTTTATTGATTTTATTAATTTTGCCATTTGCTATTCCTCTTTATAATTGGAA
AAGAAATGATTCAAATAAAGAAAAAGTTGAATTTAATAAAGCAAATGCAATTTTAGAAGCTGATTTTATAGAATACATTC
AAGGTTTACCTGTATTAAGAGCTGTGAATAAGGTTGGAGTGAATGCTCAAAATTTACATGATTCTATAGCCCATGTAAAA
GAAGTACAAAAAGAAGGATTACATAAAGGACAAATTCCCTTTGTACTTATGGGTATCTTGATTGAAATAACTTTATTGGC
ATTGGTTTTTATAGGCTCATATTTTATATTAGATAATAGCTTATCTATTATAACTTTAGCTGCTGCTGTAATTGTTGTAT
CTAGATTATCAGAACCCTTATCTATTTTTTTAGGAGTAGTTTCAGTATTTGATATCATGGATTCAGCATTTAATCGAATA
AAAGCTATTTTCGCTATTAATCCATTAATTATAGAAAAACCATATCAAGAGGCAGAAACTTTTGATATTACTTTTGATAA
TGTAAGTTTTGCTTATGAAAATCAGAAAACAAATGCACTTAAAAAAGTAAGTTTTTCTATGCCAAATAAAACAATGACAG
CTATAGTTGGACATTCAGGTTGTGGTAAAACAACACTTACAAAAATGATTATGAGATATTCAGATCCCCAAACTGGAAGT
ATTAAAATTGGTGGAATAAATATAAAAAATATGAGTTCAATAGATTTGATGAAAAATATCTCAGTGGTATTTCAAGATGT
ATATTTATTTGATGATACTATTATGAATAATATTCGTATGGCAAATCAAAATGCTACGGATAAAGAAGTAGAAATTGCAG
CCCAAAGTGCATTTTGTCATGAGTTTATTTCTAGATTACCTGCTGGTTATAATACAACAATAGGAGATATTGGTGGAAGC
TTAAGTGGAGGAGAAAAGCAAAGAATAAGTATAGCAAGAGCTATATTAAAAAATGCACCCATAGTAATTCTTGATGAACC
CACTGCTGCTCTTGATACTCAAAGTGAAGTCGCTGTACAAAAAGCTATTGATAAACTTCTTGAAGATAAAACAGTAATAG
TAATTGCTCATAGACTTTCTACTATTTCAAGTGCAGATAATATCCTTGTATTAGATAATGGAGAAGTAATTGAGATGGGT
ACTCATAATGAATTAGTAAATAACAAAGACAAATATTTTGATATGTGGTCTGCTCAACAAAGAGTAAAAGAATGGAGTCT
GGATGCATAA

Protein sequence : 
MKKNQFTSISTIYKLTLELAGDKENEFKKSLIYFTLAFVSQGLAFGMFYPMLKSMFAETFILSNTFLYLGVMALFSVISF
WAKWKGHDFDYTGNIVEISHDIRTKLGVALRKMPLEKLSRYKTGELNSIFSSNVDESVLHMGMIASMFLQIIIVPITIVI
FTFFVDYRLALLILLILPFAIPLYNWKRNDSNKEKVEFNKANAILEADFIEYIQGLPVLRAVNKVGVNAQNLHDSIAHVK
EVQKEGLHKGQIPFVLMGILIEITLLALVFIGSYFILDNSLSIITLAAAVIVVSRLSEPLSIFLGVVSVFDIMDSAFNRI
KAIFAINPLIIEKPYQEAETFDITFDNVSFAYENQKTNALKKVSFSMPNKTMTAIVGHSGCGKTTLTKMIMRYSDPQTGS
IKIGGINIKNMSSIDLMKNISVVFQDVYLFDDTIMNNIRMANQNATDKEVEIAAQSAFCHEFISRLPAGYNTTIGDIGGS
LSGGEKQRISIARAILKNAPIVILDEPTAALDTQSEVAVQKAIDKLLEDKTVIVIAHRLSTISSADNILVLDNGEVIEMG
THNELVNNKDKYFDMWSAQQRVKEWSLDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtQ NP_669703.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 3e-101 42
ybtQ NP_993010.1 ABC transporter permease Virulence HPI Protein 3e-101 42
ybtQ YP_070127.1 ABC transporter permease Virulence HPI Protein 3e-101 42
ybtQ CAA21387.1 - Virulence HPI Protein 3e-101 42
irp7 YP_002346905.1 ABC transporter permease Not tested HPI Protein 3e-101 42
APECO1_1055 YP_853072.1 ABC transporter Not tested PAI IV APEC-O1 Protein 6e-102 42
irp7 CAB46572.1 inner membrane ABC-transporter, Irp7 Virulence HPI Protein 2e-100 41
irp7 YP_001006812.1 inner membrane ABC-transporter YbtQ Not tested HPI Protein 3e-100 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arnit_0537 YP_003654708.1 ABC transporter-like protein BAC0433 Protein 1e-101 42