Gene Information

Name : Arnit_0536 (Arnit_0536)
Accession : YP_003654707.1
Strain : Arcobacter nitrofigilis DSM 7299
Genome accession: NC_014166
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 523132 - 524916 bp
Length : 1785 bp
Strand : +
Note : COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR011527:IPR 003593:IPR001140; KEGG: abu:Abu_0339 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter related; ABC tr

DNA sequence :
ATGAAAAAATATGAAAAACAAAAACAAGGACTTTGGAGTATTATTGCTCCAGTTAATATTTATATAAAATTTGCGATGTT
CTTATCAGCTATTGGCGCAATTACTTCAGTTATGGGATTCGTCCTTTTAGCATACGTTATAGGGTTGACATCAGGTGGGT
CTATTAGTTTATTTGGAATAAACTTTGAATTAAAAGAATCTTTGATTCTTTTATCTGTAATTACAATTTTTTCATTTCTG
GCTAAGTATTATTCTTTTGTAATATCTCATCTTGGAGCTTTTAGGTTAGAACAAATTTTAAGAGTAAAGATTACTACTCA
TATGTCACAAGTTCCATTAGGTCATATAATAACTATAGGTACTGGTGCGATAAAAAAAGTTTTACTTGATGATGTGAAAA
ACTTGCATGCTTTTGTGGCAGATAATACACCTTTTATGGCAAAAGCAATTATTTCTCCTATTGCTTCAATGATAGCACTA
TTTTTTATTGATTATCGATTAGCTTTTGTTGCTTTTGGTGTATTATTAATTGGTGGCATTCTTATGAGTCTTGTGATGAA
GGATTCGGTGAATTATAGGAATAATTATGAACAAAGCCAATCCGAAATCAATAAAGCAGTTGTTGAATTTATTCAAGCAA
TGCCAGTTGTTAGAACATTTGATGATGGTACAACTTCTTTTAAACGATATAATAATTCACTTGATCGATACCGTATGCAT
TTAAAAGAGTGGATAGCAACAACAAGTAATCCAGCTAGAATATCTATGACTATACTAAGTCCTATGCCAACGCTTTTAGC
TATAAGTATTGCTGGATTATTTTTTATGATAAATGGCACTCTTTTATTTGCTCCTTTTATTGCTGCTTTACTTGTAAGTA
CAGGAATGGCAGATGCAATGATACCTTTAATGTGGATGAGTAATTTTGTCAAAAAATCAACTGCAGCTGCTATAAGAATA
CAAGAAATTATGACAATTCCTAGTCTAAAAATAAGTGATAAAAAAGAAAAAATCGAAAATACCAATATTGTATTTGAAAA
TGTTTCATTTAAATATAAGGAAGAAGATAATTACGCACTTAAAGGAGTCTCTTTTGAAGTACCTAAAAATACAGTAACGG
CACTTGTAGGAGCAAGTGGAGCAGGGAAAAGTACTGTAGCAAAACTTATTCCTAGATTTTGGGATGTAACAAGTGGAACT
ATTAAAATAGGTGATGTAAATATCAAAAATATTGATTCAGAAACTTTAATGAATACAGTTTCCTTTGTGTTTCAAGATAC
CTTTTTATTTAATGATACCCTTGGAAATAATATAAAAATAGCCAATAATAATGCTAGTGACGAAGATATGATACAAGCTG
CAAAAGCAGCTCAAATTCATGAATTTATCCAAAGTTTACCCAATGGCTATGAAACAATGGCAGGAGATAGAGGAACAAAT
CTTTCAGGTGGTCAAAAACAAAGAATTACGATTGCTCGATCGATTTTAAGGAATACTCCTATTGTAGTGCTTGATGAAGC
AACTGCTTTTGCTGATCCTGAAAATGAAGAAGAAATTATCAAAGCTTTAGCAAATCTGATGAAAAATAAAACAGTTATTG
TAATTGCACATAGACTCTCAACCATAAAAGATGTTAATCAAATCATAGTATTTGATAATGGTGAAATAAAAGAAAAAGGA
AAGCATGAAGAACTCTTACAGATACAAGGGATTTATGCAAATCTTTGGAGCAATTATGAAAAAGCTCAAAATTGGGATAT
GCAACATATAGGAGCTGAAAAATGA

Protein sequence :
MKKYEKQKQGLWSIIAPVNIYIKFAMFLSAIGAITSVMGFVLLAYVIGLTSGGSISLFGINFELKESLILLSVITIFSFL
AKYYSFVISHLGAFRLEQILRVKITTHMSQVPLGHIITIGTGAIKKVLLDDVKNLHAFVADNTPFMAKAIISPIASMIAL
FFIDYRLAFVAFGVLLIGGILMSLVMKDSVNYRNNYEQSQSEINKAVVEFIQAMPVVRTFDDGTTSFKRYNNSLDRYRMH
LKEWIATTSNPARISMTILSPMPTLLAISIAGLFFMINGTLLFAPFIAALLVSTGMADAMIPLMWMSNFVKKSTAAAIRI
QEIMTIPSLKISDKKEKIENTNIVFENVSFKYKEEDNYALKGVSFEVPKNTVTALVGASGAGKSTVAKLIPRFWDVTSGT
IKIGDVNIKNIDSETLMNTVSFVFQDTFLFNDTLGNNIKIANNNASDEDMIQAAKAAQIHEFIQSLPNGYETMAGDRGTN
LSGGQKQRITIARSILRNTPIVVLDEATAFADPENEEEIIKALANLMKNKTVIVIAHRLSTIKDVNQIIVFDNGEIKEKG
KHEELLQIQGIYANLWSNYEKAQNWDMQHIGAEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 5e-116 46
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 4e-116 46
ybtP CAA21388.1 - Virulence HPI Protein 4e-116 46
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 3e-116 46
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 5e-116 45
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 2e-115 45
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 5e-116 45
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 5e-116 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arnit_0536 YP_003654707.1 ABC transporter-like protein BAC0432 Protein 2e-116 46