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Name : Arnit_2539 (Arnit_2539) Accession : YP_003656695.1 Strain : Arcobacter nitrofigilis DSM 7299 Genome accession: NC_014166 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2543103 - 2544833 bp Length : 1731 bp Strand : - Note : COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR016040:IPR003869; KEGG: abu:Abu_0696 sugar epimerase/dehydratase; PFAM: polysaccharide biosynthesis protein CapD; SPTR: C1ZZP7 Predicted nucleoside-diphosphate sugar epimerase; PFAM: Polysa DNA sequence : ATGTTTACTTTGGATAAAAGAGTTTTAAATATTTTAGTGATTATCTTTTTAAGTTTTATTACATTTTATTGGACTTTTTT TATATTTCATCAAAAGGCACAAGTAAATATTATCTTAGGTGTTATATGTATAAGAATTATTGTTTCATTCTTAATTTATA AAGATTATTCCCTATCTTGGAGTAAATCTACTACACGAACATTCTTAATTAAAAGTATTGTTTATCTTGCAGCATTTGTT ATTTACTTACCAATATATTATGGTACTGTAAGATTTGCACTTCTTGCTAGTGAACTTTTTTTATATCTTTTTTCTATAAA CTTTTTAATGTATTCTTATAACTATTTTATAAATAAATGTAGAGTAATAAAAGATAAAAGAGTTGTTATTTATGGTGCTG GAAAAGCTGGAACAAAATTAAGTGAAGAGTACAGAAATAGTCAATATTTGATAAAATATTTTGTTGATGATTCTAAAAAG CTCCAGAAAAGAAGTATTGATGGGATACAAATACTTTCTAAATCAAAGTTAAAAAATATAATTCAAAAGCAAAAATATGA ACTTTTAGTAATAGCAATGCCAAGTGCAAGTAAAAGTAGAATAAAATTTATTTACGATGAATTAAGTCCATATTTTAAAA CAATTAAAATACTTCCATCTCTGAGTGAAATACTACAAGAAAAAGATTACTCTACACAGTTAAAAGATATTTCTGTAGAG GATTTACTTGCACGTCATCCAAAAGATTTAGATAAAGAAAAAATTGAAAACTTCATAAAAGATAAAGTAGTACTAATCAC AGGTGCTGGTGGAAGTATAGGTAGTGAAATATCTAGGCAGTGTAAAAAGTTTGGTGCAAAACAACTAATCTTATTAGATC ATAGTGAATTTAATCTTTACCAAATAACTGAAGAGTTAAATTCAGATATTGTTATTCCTGTTATGCAAACGGTTAGAAAT TTTGGATTTATAGAAAATACTTTTAAAAAATATAAACCTCAAATAGTGATTCATGCAGCAGCTTATAAACATGTGCCATT GGTTGAAGATAATATTTTAGAAGGAATATCAAATAACATAATAGGGACCAAAAATTGCATAGATTTATCTATAAAATATG AGGTTGAGAAATTTGTACTAATTTCTACTGATAAAGCAGTACGTCCTACAAATGTTATGGGGACCACAAAACGTATTTGT GAACTTTATGCACAAAATGTTAAGTCAGATTCTACAGAAATTGTAGCTGTACGATTTGGGAATGTTTTAGGAAGTAGTGG AAGTGTTATTCCTAAGTTTAAATCACAAATTGAATCAGGTGGTCCTATTACTGTGACTCACCCTGATATTACTAGATATT TTATGCTCATACCTGAGGCCTGTGAACTTGTATTACAAGCTGCAAGTATAGGAAAAGGTGGAGAGATATTTATTCTTGAT ATGGGAGAACCTATAAAAATAGTTGATTTGGCTAAAAAAATGATAGAGCTAAGTGGTAGAGAAAATGTACAAATAGAATT TTGTGGGTTAAGACCTGGTGAGAAGTTATACGAAGAATTACTTATCAATGATAGTGATAAGAATACAGATTATGAGTCAA TCACAGTTGCAAGTTCTACGCTGTTTGATATAGATTTATTAAATAAGAAGATTGATGAACTTCTGATAAGTGAAGATAAA ATAAAAGTATTAAAAGAGATAGTTCCTGAATTTAATCACAAATTAAATTAA Protein sequence : MFTLDKRVLNILVIIFLSFITFYWTFFIFHQKAQVNIILGVICIRIIVSFLIYKDYSLSWSKSTTRTFLIKSIVYLAAFV IYLPIYYGTVRFALLASELFLYLFSINFLMYSYNYFINKCRVIKDKRVVIYGAGKAGTKLSEEYRNSQYLIKYFVDDSKK LQKRSIDGIQILSKSKLKNIIQKQKYELLVIAMPSASKSRIKFIYDELSPYFKTIKILPSLSEILQEKDYSTQLKDISVE DLLARHPKDLDKEKIENFIKDKVVLITGAGGSIGSEISRQCKKFGAKQLILLDHSEFNLYQITEELNSDIVIPVMQTVRN FGFIENTFKKYKPQIVIHAAAYKHVPLVEDNILEGISNNIIGTKNCIDLSIKYEVEKFVLISTDKAVRPTNVMGTTKRIC ELYAQNVKSDSTEIVAVRFGNVLGSSGSVIPKFKSQIESGGPITVTHPDITRYFMLIPEACELVLQAASIGKGGEIFILD MGEPIKIVDLAKKMIELSGRENVQIEFCGLRPGEKLYEELLINDSDKNTDYESITVASSTLFDIDLLNKKIDELLISEDK IKVLKEIVPEFNHKLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-74 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Arnit_2539 | YP_003656695.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-77 | 43 |
