Gene Information

Name : Arnit_2476 (Arnit_2476)
Accession : YP_003656633.1
Strain : Arcobacter nitrofigilis DSM 7299
Genome accession: NC_014166
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 2470505 - 2471812 bp
Length : 1308 bp
Strand : -
Note : COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR005714:IPR018538:IPR000194:IPR003593; KEGG: abu:Abu_1940 flagellum-specific ATP synthase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; HerA-AT

DNA sequence : 
ATGACAGATTTAGATAAGTTTATAGATAATATTGATAAAAATAATTTAATAATTCCTTTTGGAAGAATTACTCATATAAG
TTCAACTACAATAAAAGCAGTGGGAATAGAAGTGGCTGTTGGAGATATTGTGAAAATAGAATCTCAACACCACTTGTACA
CAGTTTTGGGCATGATTGCTTCTGTTGAAAGCGATGGCTTTAAGATTGTACCCTTTTCTTTTATTGAAGGTTTTAGAATT
AATGATAAAGTTTTTTTACAAAAAGATGGACTAACTGTAAAAAGTGGATATGGATTATTAGGAAGAGTTGTAAATGCCTT
AGGTGAACCTATTGATAAAAAAGGTAAAGTAAAGGATTTAGAACAAAATTCTGCAATAAACAAATTATCAATTCCTGCTT
TGGAAAGGGGAATTATTGATGAAAGATTTTCAACAGGAGTTAAAGCAATAGATTCAATGCTAACATCTGGAAAAGGACAA
AAAGTAGGGATTTTTGCTGGAAGTGGTGTTGGAAAATCAACTTTAATGGGAATGATTGTCAAAGGGTGTGAAGCCCAAAT
AAAAGTTGTAGCACTAATAGGTGAGAGGGGAAGAGAAATTCCTGAGTTTATTCATTATAATTTAAATAATAATCTAGAAA
ATACAATAATTATTGCTGCAACATCAGATGAATCAGCTCTTATGAGAAAATATGGTGCTTTTACAGCTATGGCAATTGCT
GAATTTTTTAGAGATAAAGGGCATGATGTTTTACTTATGATGGACTCAGTTACAAGGTTTGCAATGGCTCAAAGAGAAAT
TGGACTAAGTATTGGAGAACCACCAGTTAGTAGGGGATATCCACCTTCTGTTTTTGCTCTTTTGCCCCAATTGATGGAGC
GAGCTGGAAATACGGAGCTTGGTTCTATAACTGCATTTTTCACTGTATTAGTTGATGGTGATGATATGAATGACCCAATT
GCAGATCAAAGTAGATCAATCCTTGATGGGCATATTGTTTTAACAAGAGAATTAACAGAACAAGGTCAATATCCACCCAT
AGATTTATTAAGGTCTGCATCAAGGGTTATGGATAAAGTTGTTAGTCCTGAACATTATAATGGATTTTTAAAGTTAAAAA
GAGTATTATCACTAATAAAAGAAAACGAAATATTAATTCGTGTTGGTGCTTATAAGCAAGGTATGGATAAAGAATTGGAT
GATGCTTTAGCAAAAAGAGAAAAAATTAAGACCTTTCTTTTTCAAGGAACATCTGAAAAATATGACTTTAACCAGATTTT
TAACCAATTTATGGAGGTGATTAAATGA

Protein sequence : 
MTDLDKFIDNIDKNNLIIPFGRITHISSTTIKAVGIEVAVGDIVKIESQHHLYTVLGMIASVESDGFKIVPFSFIEGFRI
NDKVFLQKDGLTVKSGYGLLGRVVNALGEPIDKKGKVKDLEQNSAINKLSIPALERGIIDERFSTGVKAIDSMLTSGKGQ
KVGIFAGSGVGKSTLMGMIVKGCEAQIKVVALIGERGREIPEFIHYNLNNNLENTIIIAATSDESALMRKYGAFTAMAIA
EFFRDKGHDVLLMMDSVTRFAMAQREIGLSIGEPPVSRGYPPSVFALLPQLMERAGNTELGSITAFFTVLVDGDDMNDPI
ADQSRSILDGHIVLTRELTEQGQYPPIDLLRSASRVMDKVVSPEHYNGFLKLKRVLSLIKENEILIRVGAYKQGMDKELD
DALAKREKIKTFLFQGTSEKYDFNQIFNQFMEVIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escN AAL57542.1 EscN Virulence LEE Protein 2e-77 46
escN YP_003223475.1 translocator EscN Virulence LEE Protein 6e-78 46
escN CAC81862.1 EscN protein Virulence LEE II Protein 6e-78 46
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 6e-78 46
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-78 46
escN AAK26715.1 EscN Virulence LEE Protein 2e-77 46
unnamed AAL06369.1 EscN Virulence LEE Protein 1e-75 45
escN AAC38383.1 EscN Virulence LEE Protein 9e-77 45
escN AAC31513.1 L0034 Virulence LEE Protein 3e-77 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 5e-77 45
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-77 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 5e-77 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-77 45
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 8e-77 44
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 8e-77 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-68 43
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-69 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-69 43
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-69 43
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-68 43
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 43
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 43
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 8e-80 43
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-79 43
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 8e-80 43
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-78 42
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-78 42
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-79 42
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-77 42
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-77 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 2e-54 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG0048 Protein 1e-76 45
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG0812 Protein 2e-77 45
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG0730 Protein 5e-77 45
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG2144 Protein 1e-77 43
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG0515 Protein 6e-70 43
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG0390 Protein 1e-76 43
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG0192 Protein 3e-76 43
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG1778 Protein 2e-59 43
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG1254 Protein 5e-68 42
Arnit_2476 YP_003656633.1 FliI/YscN family ATPase VFG2499 Protein 2e-67 42