Gene Information

Name : Arnit_1944 (Arnit_1944)
Accession : YP_003656105.1
Strain : Arcobacter nitrofigilis DSM 7299
Genome accession: NC_014166
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1940651 - 1941379 bp
Length : 729 bp
Strand : +
Note : COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: abu:Abu_0995 flagellar biosynthesis protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: A8ETI1 Flagellar biosynthetic protein FliP;

DNA sequence : 
TTGAAAATTATATTAGCACTTTTTATATTTTCTATTTCACTTTTTGCTGCTGATAATTTGCCAGTGATAAATCTTTCAAT
TGCATCAATCGATCAACCTGCACAATTTGTAAAAACAATAAATATAGCTATTATTCTTATACTACTAGCAATGGCACCAA
CCTTACTATTAATGGTGACAAGCTTTACAAGACTTATAATCGTATTATCATTGCTAAGACAAGCAATGGGGCTTCAACAA
GCACCTCCAAACCAAATAGTAATATCTATGGCACTTATTTTGACTATATTTATTATGGAACCATATGCTAAGACCTCTTA
TAATGAAGGTATTAAACCTTACATGGAAGAGAAAATTGGTTATGAAGAAGCTTTTGCTAAAAGTGTGAAGCCATTTAAAG
AATTCATGATAAAAAATACAAGAGAAGAAGATATTGCCCTTTTTTATCGTATAAAAAAAGAAAAAAATCCTAAAAATATA
GATGATGTTGCTCTTACTCTTTTGATGCCTGCATTTATTGTAAGTGAATTAAGAACAGCCTTTGAAATAGGATTTTTAAT
ATTCTTACCTTTTTTAGTTATTGATATTATTGTAGCTTCCATACTTATGAGTTTAGGTATGATGATGCTACCTCCTGTAA
TGATATCCTTGCCCATAAAGGTTATCTTTTTTATTATTATAGATGGGTGGCAACTTATTATTGGAAATCTTGCACAATCT
TTTAAATAA

Protein sequence : 
MKIILALFIFSISLFAADNLPVINLSIASIDQPAQFVKTINIAIILILLAMAPTLLLMVTSFTRLIIVLSLLRQAMGLQQ
APPNQIVISMALILTIFIMEPYAKTSYNEGIKPYMEEKIGYEEAFAKSVKPFKEFMIKNTREEDIALFYRIKKEKNPKNI
DDVALTLLMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIIIDGWQLIIGNLAQS
FK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-32 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-30 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-30 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-30 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-30 41
escR AAK26700.1 EscR Virulence LEE Protein 1e-30 41
escR AAL57527.1 EscR Virulence LEE Protein 1e-30 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-30 41
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-30 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Arnit_1944 YP_003656105.1 flagellar biosynthetic protein FliP VFG2494 Protein 7e-52 54
Arnit_1944 YP_003656105.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-47 52
Arnit_1944 YP_003656105.1 flagellar biosynthetic protein FliP VFG2016 Protein 7e-49 51
Arnit_1944 YP_003656105.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-49 51
Arnit_1944 YP_003656105.1 flagellar biosynthetic protein FliP VFG0519 Protein 7e-31 41