Gene Information

Name : Tbis_0872 (Tbis_0872)
Accession : YP_003651489.1
Strain : Thermobispora bispora DSM 43833
Genome accession: NC_014165
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 990685 - 991431 bp
Length : 747 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1439 lipoprotein releasing system, ATP-binding protein

DNA sequence : 
ATGACCGAGCCACCGGTGATCCAGGCGATCAACCTCGTGAAGATCTACCAGACCGGCGGGGTGCCGGTGCCGGCGATCCG
CGGGGTCGACCTCACCGTCAACCCCGGCGAGTTCGTCGCGATCATGGGGCCGTCCGGGTCGGGCAAGTCCACCCTGATCC
ACCTGCTCGGCGGCCTCGACACCCGCACCAGCGGGGAGATCTGGCTCGACGGGCAGCGGGTCGACACGCTCTCCGAGAGC
GCCTGGGCCCTGCTGCGCCGCCAGAAGATCGGCTTCGTCTTCCAGTTCTTCAACCTGGTGGCGAACATGACCGTCGCCGA
CAACGTGGAGCTGCCCGCGCTGCTCGGCGGCGCCTCGCCCAAGGTCGCCCGGGAGCGGCGGGAGTACCTGCTCGCCGAGC
TGGGGCTCGCCGACCGGGCGGGCGTCTCGCCCGCCCAGCTCTCCGGCGGGGAGCAGCAGCGGGTCGCGCTCGCCCGGGCG
CTCGCCAACCATCCTCGGCTGCTGCTCGCCGATGAACCGACCGGTAACCTCGACAGCCGCAACACCCGGGACGTCCTGCG
CCTGCTGAGCGAGGTCCACCGGAAGGGCCAGACGATCGTGCTCGTCACCCACGACGCCCGGGTCGCCGGGATGGCCGACC
GCGTGGTGTACCTGCTGGACGGCCAGATCGTCGACGACGGGCCGGTGGCCGGCGTGCGGCGCAGGATCGGCGGGACCGCG
GGCGACGTCGTCGAACTGCGAGGCTGA

Protein sequence : 
MTEPPVIQAINLVKIYQTGGVPVPAIRGVDLTVNPGEFVAIMGPSGSGKSTLIHLLGGLDTRTSGEIWLDGQRVDTLSES
AWALLRRQKIGFVFQFFNLVANMTVADNVELPALLGGASPKVARERREYLLAELGLADRAGVSPAQLSGGEQQRVALARA
LANHPRLLLADEPTGNLDSRNTRDVLRLLSEVHRKGQTIVLVTHDARVAGMADRVVYLLDGQIVDDGPVAGVRRRIGGTA
GDVVELRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-37 46
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 1e-17 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tbis_0872 YP_003651489.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-43 46
Tbis_0872 YP_003651489.1 ABC transporter-like protein NC_012469.1.7685735. Protein 6e-45 46
Tbis_0872 YP_003651489.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-42 45
Tbis_0872 YP_003651489.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-37 45
Tbis_0872 YP_003651489.1 ABC transporter-like protein CP001581.1.gene598.p Protein 4e-38 42
Tbis_0872 YP_003651489.1 ABC transporter-like protein NC_012469.1.7686946. Protein 6e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tbis_0872 YP_003651489.1 ABC transporter-like protein VFG2059 Protein 2e-19 42
Tbis_0872 YP_003651489.1 ABC transporter-like protein VFG0869 Protein 9e-23 41