Gene Information

Name : Tpau_0646 (Tpau_0646)
Accession : YP_003645622.1
Strain : Tsukamurella paurometabola DSM 20162
Genome accession: NC_014158
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 664954 - 665793 bp
Length : 840 bp
Strand : -
Note : KEGG: lxx:Lxx14530 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA

DNA sequence : 
GTGGTCCGTGCGGCGGATGTGACGGGCCTGCTCCCGCCCGACGATGGAGACATGCATACCGACCACGCCTCCGCCACGCT
CGCACCGCCCCGGCGCACCGTTCCCGTCGTCGCCTTCACGGGCGTCACCAAGTCGTACGGGACGGGCGACGCAACGGTCA
TCGCGCTCGACTCGGTGAACCTCGCGATCACCGCCGGCGGTTTCACCGCGGTGATGGGACCATCGGGTTCGGGCAAGTCC
ACACTGCTCAACCTCGCCGCAGGCCTGGACCGGCCCACTCAGGGTGAGGTTCACCTGGCGGGCTCCCCGATCACGGCGAT
GCCCGACGATCAGTTGGCCGATCTGCGCAGCACCAGGGCCGGGTTCATCTTCCAGGCCTTCAACCTCGTCCAGTCGATGA
CGGCGCGACAGAACATCGAGTTGCCCTTCCGCCTGCGCGGCGCGAAAGTCACCGCGGAGGACGCCGGCTGGATCGATTAT
CTGGCCGAAACCCTGGGCATCACCGGTCTCCTGCACCGACGCCCGAGCGCGATGTCGGGCGGGCAGCAGCAGCGCGTCGC
GATCGCACGAGCGCTGGCGGCCCGTCCGCAGGTGATCTTCGCCGACGAACCCACCGGGTCGCTCGATTCCCGCACCAGCC
GCGAGGTCCTCGGCATCCTCAAGTCGGCCTGCGCCGAGTACCGGCAGACCGTCGTGATGGTCACCCACGATCCGGTCGCC
GCCTCGTACGCCGATCGCGTCCTGGTCATCGCGGACGGCCGCGTGGCAGGCGACTACGCGTCGATGCCGGCCGCGCGGAT
CGCAGAGATGATGGTCGGTCTCGAAGGTGGTACACGGTGA

Protein sequence : 
MVRAADVTGLLPPDDGDMHTDHASATLAPPRRTVPVVAFTGVTKSYGTGDATVIALDSVNLAITAGGFTAVMGPSGSGKS
TLLNLAAGLDRPTQGEVHLAGSPITAMPDDQLADLRSTRAGFIFQAFNLVQSMTARQNIELPFRLRGAKVTAEDAGWIDY
LAETLGITGLLHRRPSAMSGGQQQRVAIARALAARPQVIFADEPTGSLDSRTSREVLGILKSACAEYRQTVVMVTHDPVA
ASYADRVLVIADGRVAGDYASMPAARIAEMMVGLEGGTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_0646 YP_003645622.1 ABC transporter CP001581.1.gene798.p Protein 2e-41 46
Tpau_0646 YP_003645622.1 ABC transporter NC_008702.1.4606598. Protein 8e-34 45
Tpau_0646 YP_003645622.1 ABC transporter CP001581.1.gene598.p Protein 5e-43 44
Tpau_0646 YP_003645622.1 ABC transporter NC_012469.1.7686878. Protein 7e-40 42