Gene Information

Name : Tpau_4055 (Tpau_4055)
Accession : YP_003648964.1
Strain : Tsukamurella paurometabola DSM 20162
Genome accession: NC_014158
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2826
EC number : -
Position : 4184785 - 4186158 bp
Length : 1374 bp
Strand : -
Note : PFAM: integrase; KEGG: cms:CMS_2918 insertion element ISCmi3 transposase

DNA sequence :
GTGCATTCACCGATGGTGAAGAAGAGGTTCTTCAAGGAATTGGACGTGTCTGACGGCAATGTGTCGGTCGCTGCTAGGGC
GGCGGGGGTGACAGTGAATACGGCGTTTGGATGGATGCGCAGGGCGGGCCTGCGTGGACGTGGGAGCACTAGCAATGGTG
GTCATCCCGGCCGGGCCGAGTACGACCGGCTTCGCCGTGAGGGGGTGCTGCGGCCGGACGCTGCTCGGCGTGTCGGTGTC
AGCGTTCGCACTGCTGGGGACTGGGATCGAGGGGTGCGCAAGATTGGCGATACTCGTATCCATCCCGACGGACGCAAGAT
CGATTACCTGACAGGTGCGGTCACGTGGGTCGGAGTGGAATCGGATGCACCGAGGCAGCGGAGCCTGCATCCACGGTTTC
TGACCTTGACCGAGCGGGAAACTATCGCTGACATGCGCCGCGAGGGGGCATCGCTGCGGGCCATCGGCAGGGAGCTCGGC
CGGCCAGCATCGACGATCAAACGGGAGATCGACGCTGGCGTTGTCAACGGTGCCTATCGCCCGCATCAGGCGCACCGCAG
GTGGGAAAAGAGCCGGTCACGGCCGAAGCCAGCGAAACTGGCCCAGGCCGGTCCGCTGCGGGACTACGTCGAGAACAAAC
TGCAGGACCAGTGGTCCCCAGAGCAGATATGTCACTCTCTAGTGACCGAGTTCCCCAACGAGCAAAGTATGCGTGTGAGC
GTCGAGACGATCTACCAGTCGATCTACGTTCAGGCTCGGGGCGGCCTGCGCCGTGAAGTCGCGATGGCCTTGCGAACGGG
CCGCACCCGCCGCAAGCCCCACCGCCGCGCCGAACATCGCACCAGACGATTCGTCGACAAGATGGTGATGATCTCCGACC
GGCCCGCCGAGGTCGAGGATCGAGCCGTGCCAGGCCACTGGGAAGGTGACCTGATCGTCGGTACTCGCAGCGAGTCCGCG
ATCGTCACACTCGTCGAACGCTCCACCCGCTACGTCATGCTCGGCCACCTGCCTGGCGGCCACTCCGCCGAAGAAGTCCG
TGACGTGCTGGTTTCGTTGATCGGAAATCTCCCAGGACATTTGCGGGGATCACTGACCTGGGACCAGGGCTGCGAGATGG
CCGCCCACCAACAATTCACGGTCGCCACCGGGGTTCCGGTCTACTTCTGCGATCCCCACTCACCCTGGCAGCGCGGAAGC
AACGAGAACACCAATGGACTACTGCGCCAGTACTTCCCGAAAGGCACCGACCTGAGCGCCTACGGCCGCGAAGACCTCGA
ACTCGTCGCCCAGAAACTCAATCGCCGACCACGCAAAACGCTCGGCTGGAAGACACCAGCCGAGCGTTTGCGTGACCTCA
TTACAGCTCGCTAG

Protein sequence :
MHSPMVKKRFFKELDVSDGNVSVAARAAGVTVNTAFGWMRRAGLRGRGSTSNGGHPGRAEYDRLRREGVLRPDAARRVGV
SVRTAGDWDRGVRKIGDTRIHPDGRKIDYLTGAVTWVGVESDAPRQRSLHPRFLTLTERETIADMRREGASLRAIGRELG
RPASTIKREIDAGVVNGAYRPHQAHRRWEKSRSRPKPAKLAQAGPLRDYVENKLQDQWSPEQICHSLVTEFPNEQSMRVS
VETIYQSIYVQARGGLRREVAMALRTGRTRRKPHRRAEHRTRRFVDKMVMISDRPAEVEDRAVPGHWEGDLIVGTRSESA
IVTLVERSTRYVMLGHLPGGHSAEEVRDVLVSLIGNLPGHLRGSLTWDQGCEMAAHQQFTVATGVPVYFCDPHSPWQRGS
NENTNGLLRQYFPKGTDLSAYGREDLELVAQKLNRRPRKTLGWKTPAERLRDLITAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDC7B_2059 YP_005163500.1 transposase-like protein Not tested Not named Protein 2e-62 45
CDC7B_2034 YP_005163475.1 transposase-like protein Not tested Not named Protein 3e-62 44
DIP0764 NP_939135.1 transposase Not tested Not named Protein 1e-62 44