Gene Information

Name : Tpau_3758 (Tpau_3758)
Accession : YP_003648675.1
Strain : Tsukamurella paurometabola DSM 20162
Genome accession: NC_014158
Putative virulence/resistance : Virulence
Product : transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 3876008 - 3877102 bp
Length : 1095 bp
Strand : -
Note : PFAM: transporter permease; KEGG: sco:SCO0497 iron-siderophore permease transmembrane protein

DNA sequence :
GTGACCGTAGATCTCTCGACGACACGCGACGAACCGTCGGCACCCGCGCCCCCCAGCGCAGGTGCCGCGCGGCGGCGCAA
ACGTCTCCTCGGGCTCCTGCTCCTGGCGATCCTGCTCGTCGTGACCGTGGTGGCCTCGCTGGCGATCGGCTCGCGCGACC
TCGCGCCGTCGGCGGTCTGGGACGGACTGTTGTACCGCTACACCACCGGCCCGAATCCGGGCGACCCGCAGCTCAACGAA
GCCGCGATCATCGTCCAGACGCTCCGCGTGCCGCGCACCATCCTGGCGTTGCTGGCCGGGGCGGCACTCGCGCTTGCGGG
CGCCCTGCTCCAGGGGCACACCCGGAATCCGATCGCCGATCCCGGAATCCTCGGAATCACTCAGGGCGCCGCGTTCGCCG
TGGTCTGCGCGATCTTCCTCGGTGGCCTTACCCAGCCGCTGCAATACGTGTGGTTCGCCTTCCTCGGTGCCGCGGTCGCG
GCCTTCGTCGTGTTCGGGCTCTCCAGCCTCGGTGGCGGCGCCGCATCGCCTCTGACTCTGGTTCTCGCAGGTACCGGCGT
CGGCCTCTTCCTCAGCTCGATGACCTCGGCCATCGCGCTCAGCGATAACGCCTCGCTCGATGCCCTGCGGTTCTGGAACG
CGGGTGCCGTGGTGGGCCGCGGCTACGACGTGATCGGTGCGGTCACCCCGTTCCTGGTGATCGGCGCGCTGCTCGCGCTG
GCCAACGGACCGGCGGTGAACCTACTCAACCTGGGCGACGATGTGGCCCGGGGGCTCGGGCTCAACGTGAACCTCTCGCG
CACCGTCGGCGTGATCGCCGTGACCCTCCTGGCCGGCGGTGCCACCGCCGCGTGCGGAAGCATCGCCTTCCTCGGCCTCA
TGGTCCCGCACATCACCCGCTACTTCACCGGTCCCGACTATCGCTGGTTGCTGCCCTATTCGGCGCTGCTGGGCGCCTGG
CTGCTGCTCGCCGCCGACATCGTGGGACGCGTGGTCGCGCGCCCCGGAGAACTGGAGGTGGGCATCGTGGTGGCGATGGT
CGGTGCGCCCTTCTTCGTGGCCCTCGTGTGGTGGCGGAAGGCGGTGAAGGTATGA

Protein sequence :
MTVDLSTTRDEPSAPAPPSAGAARRRKRLLGLLLLAILLVVTVVASLAIGSRDLAPSAVWDGLLYRYTTGPNPGDPQLNE
AAIIVQTLRVPRTILALLAGAALALAGALLQGHTRNPIADPGILGITQGAAFAVVCAIFLGGLTQPLQYVWFAFLGAAVA
AFVVFGLSSLGGGAASPLTLVLAGTGVGLFLSSMTSAIALSDNASLDALRFWNAGAVVGRGYDVIGAVTPFLVIGALLAL
ANGPAVNLLNLGDDVARGLGLNVNLSRTVGVIAVTLLAGGATAACGSIAFLGLMVPHITRYFTGPDYRWLLPYSALLGAW
LLLAADIVGRVVARPGELEVGIVVAMVGAPFFVALVWWRKAVKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 1e-20 42
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 1e-20 42
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 4e-15 41
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 4e-15 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 4e-15 41
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 4e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_3758 YP_003648675.1 transporter permease VFG0926 Protein 4e-20 44