Gene Information

Name : Tpau_3756 (Tpau_3756)
Accession : YP_003648673.1
Strain : Tsukamurella paurometabola DSM 20162
Genome accession: NC_014158
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3874087 - 3874911 bp
Length : 825 bp
Strand : -
Note : KEGG: sco:SCO0495 iron-siderophore ABC-transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA

DNA sequence : 
ATGAGCGCGATCGATATCCGGCGGGCCGCGCCGTCACGCTTGGGTGCCCGGAACGTCTCGTCGGGTTACGGCCAGGTCAC
CGTGCTCGACGATCTGACGCTGGATGTGCCCACCGGCCAGGTGACCACGATCATCGGTCCCAACGGTTGCGGCAAATCGA
CACTGCTGCGAACGCTGGCCCGCCTGATCAAACCGTCCGGTGGGCAGGTGCTGCTCGACGGCACCGACATCGCCACCATG
AAGACCAAGCAGGTGGCCACCACCATGGGGCTGCTGCCGCAGAGCCCGCAGGCACCCGAGGGGCTCACCGTGGCCGATCT
CGTTGCCCGCGGCCGGCATCCCCACCAGAGCTGGCTGCGCCAATGGTCCTCCGATGACGCCGATGTGGTCGACGCCGCGC
TGTCGCAGACCGGTGTCCGCGATCTGGCCGACCGCCCCGTCGACTCGCTGTCCGGCGGTCAGCGCCAACGGGTCTGGATC
TCGATGACCCTCGCGCAGGGCACCGAGCTGTTGCTCCTCGACGAGCCCACCACCTTCCTCGACCTCTCGCACGCGCTGGA
CGTACTGGACCTGGTGGACGAGCTCAGCAGTCAGGGGCGCACCGTGGTCATGGTGCTCCACGACCTGAACCTCGCCATCC
GGTACAGCGACCACCTGGTGGCCATGCGCGACGGCGCGATCGTGGCACAGGGCACACCTGCGGACATCATCAGCGAGGAG
ATGCTGCACGAGGTGTTCGGCCTGCGGTCCAAGGTGATCGACGATCCGGTGAGTCCCGGCCGCCCGCTGATCGTGCCGAT
CGGCGAACGTCGCGCGGGCACCTAG

Protein sequence : 
MSAIDIRRAAPSRLGARNVSSGYGQVTVLDDLTLDVPTGQVTTIIGPNGCGKSTLLRTLARLIKPSGGQVLLDGTDIATM
KTKQVATTMGLLPQSPQAPEGLTVADLVARGRHPHQSWLRQWSSDDADVVDAALSQTGVRDLADRPVDSLSGGQRQRVWI
SMTLAQGTELLLLDEPTTFLDLSHALDVLDLVDELSSQGRTVVMVLHDLNLAIRYSDHLVAMRDGAIVAQGTPADIISEE
MLHEVFGLRSKVIDDPVSPGRPLIVPIGERRAGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-67 59
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-52 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-57 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-57 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-57 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-57 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-59 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-59 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-51 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-47 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-47 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-47 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-47 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_3756 YP_003648673.1 ABC transporter BAC0164 Protein 1e-52 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_3756 YP_003648673.1 ABC transporter VFG0925 Protein 2e-62 54
Tpau_3756 YP_003648673.1 ABC transporter VFG1042 Protein 1e-52 48