|
Name : Tpau_1628 (Tpau_1628) Accession : YP_003646588.1 Strain : Tsukamurella paurometabola DSM 20162 Genome accession: NC_014158 Putative virulence/resistance : Unknown Product : Tex-like protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 1701170 - 1703560 bp Length : 2391 bp Strand : + Note : KEGG: msm:MSMEG_2839 transcriptional accessory protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold DNA sequence : GTGAATTCGAGCGCGCCCGTGAAGTCCGTGTCCGCCCGCATCGCCGAGGAACTCTCGGTGGGGGAGAACCAGGTGGCCGC CGCGATCCAGCTGCTGGACGAGGGGTCGACGGTGCCGTTCATCGCCCGGTACCGCAAGGAGGTCACCGGCAGCCTCGACG ACGCGCAGCTGCGCCGGCTCGAAGAGCGGCTCGGTTACCTGCGCGAACTCGACGACCGCCGCGCCGCGGTGATCACCTCG ATCGAGGAGCAGGGGAAGCTGACGCCCGAGCTGCGTGCCGCGCTGCTCGCGGCCGACACCAAGGCCCGCGTGGAGGACAT CTACCTGCCGTACAAGGTCAAGCGGCGCACGAAGGCGCAGATCGCCCGCGAGAACGGCCTGCAGCCGCTGGCCGAACGGT TGCTCGCGGATCCGACCCTGGTGCCCGAGGAGCTGGCCGCCGAGTACCTCGGCGAGAACGTCGCCGATGCGGCGGCGGCG CTCGAGGGTGCGCGACACATTCTCGTCGAGCGGGCGTCCGAGGACGCCGAGCTGGTGGGCACGGTCCGCGAGAAGTTCTG GACCGACTCCACCCTGCGCACCGGACTGCGCGAGGGCGCCGACCCGCAGAAGGCGCAGAAGTTCCGCGACTACTTCGAGT TCTCCGAGCCGCTCGAGCAGATGCCCAGCCACCGCGTGCTGGCGGTGCTGCGCGGGGAGAAGGAAGAGGTGCTCTCCCTG CAGTTCGACGGCGGCGAGGACTCCTCGTACGAGTCGCTGGTCGCGTCCACTCTGGGGGTCGCGAACCAGGGCCGCGCCGC CGACAAGTGGCTCGGCACCGTGGTGCGGTGGGCGTGGCGCACCAAGCTCATGGTGTCCGCCACCGTCGACGCTCGCACCC GGTTGCGGCAGCGCGCCGAAGACGATGCGGTGAACGTCTTCGCGACCAACCTCAAGGACCTGCTGCTCGCGGCGCCGGCG GGTACCCGCCCCACCCTGGGCCTGGATCCCGGCTTCCGCAACGGCGTCAAGACCGCCGTCGTGGACGGCACCGGCAAGGT GCTCGACACGCTGATCATCTACCCGCACCAGCCGCAGAATCAGTGGGACAAGTCCAAGGCGTTGCTCGGTGCACTCATCG CCCGGCACGATGTGGAACTGGTCGCCATCGGCAACGGCACCGCCTCGCGCGAGACCGATGCCCTGACCACCGAACTGATC GCCGAGATCCGTGCCTCCGGTGGGAAGGTGCCGGCGAAGGCCGTGGTCAGCGAAGCCGGCGCCTCGATCTACTCCGCCTC CGAGTACGCCTCGCAGGAGCTGCCCGATATGGACGTCTCGCTGCGCGGCGCCGTGTCCATCGCGCGCCGGCTGCAGGATC CGCTGGCCGAGCTGGTGAAGATCGACCCCAAGTCGATCGGCGTGGGCCAGTACCAGCACGACGTCTCGCAGGCCAGCCTC GCGAAAAGCCTCGATGCGGTGGTCGAGGACGCGGTGAACGCGGTCGGCGTCGACCTCAACACCGCGTCGGTGCCGCTGCT CGCGCGGGTCTCCGGCGTGACCGAGAACCTGGCGGCCGCGATCGTCGCGCACCGCGACGGCGCGGGCGCCTTCCGCAGCC GCAAGGCGCTGCTGGACGTGCCGCGCCTGGGCCCCAAGGCCTTTGAGCAGTGCGCGGGTTTCCTCCGCATCAGTGGCGGC GACGATCCGCTCGACGCGTCCGGTGTGCATCCCGAGGCCTACCCGGTGGTGCGGACGATCCTGTACCGCTCCGGGTTGCA GCTGGCCGAATTGATCGGTAACAGCGCGGCGCTGGCGAAGCTCCGGCCCGCCGAGATCGCGGCCGAACTGGCCGACGAGC GGTTCGGTGTTCCGACGGTGACCGACATCCTCGCCGAGCTCGACAAGCCCGGCCGGGATCCGCGCCCGGCGTTCGCCACC GCCACCTTCGCCGCCGGCGTCGAGAAGGTCTCGGATCTGCAGCCCGGCATGGTGCTGGAGGGAGTGGTCACCAATGTCGC CGCGTTCGGCGCGTTCGTCGACGTGGGCGTGCACCAGGACGGCCTGGTCCACGTCTCGGCGATGTCCGATCGGTACGTCT CCGATCCGCACGAGGTGGTCAAGTCCGGTGAGGTGGTCAAGGTCAAGGTGGTCGACGTGGACGTCGAGCGCCAGCGCATC GGCCTCTCCCTGCGCCTGAACGACGATGCCGCCCCGAAGGAGCGCGGCGCGCGCGGAGGCCAGCAGCGCGGCGGGCAGAA CCGGGCGAATCAGAACCGTGGCGGGCAGAACCGGGCGAACCAGAACCGCGGAGGGCAGAACCGGGGCGGCCAAGACCGAG GCCAGCGCGGCGGGGCGGCACCTGCGGGCTCGATGGCGGACGCACTGCGCAAGGCCGGCTTCGGCAGGTAG Protein sequence : MNSSAPVKSVSARIAEELSVGENQVAAAIQLLDEGSTVPFIARYRKEVTGSLDDAQLRRLEERLGYLRELDDRRAAVITS IEEQGKLTPELRAALLAADTKARVEDIYLPYKVKRRTKAQIARENGLQPLAERLLADPTLVPEELAAEYLGENVADAAAA LEGARHILVERASEDAELVGTVREKFWTDSTLRTGLREGADPQKAQKFRDYFEFSEPLEQMPSHRVLAVLRGEKEEVLSL QFDGGEDSSYESLVASTLGVANQGRAADKWLGTVVRWAWRTKLMVSATVDARTRLRQRAEDDAVNVFATNLKDLLLAAPA GTRPTLGLDPGFRNGVKTAVVDGTGKVLDTLIIYPHQPQNQWDKSKALLGALIARHDVELVAIGNGTASRETDALTTELI AEIRASGGKVPAKAVVSEAGASIYSASEYASQELPDMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQASL AKSLDAVVEDAVNAVGVDLNTASVPLLARVSGVTENLAAAIVAHRDGAGAFRSRKALLDVPRLGPKAFEQCAGFLRISGG DDPLDASGVHPEAYPVVRTILYRSGLQLAELIGNSAALAKLRPAEIAAELADERFGVPTVTDILAELDKPGRDPRPAFAT ATFAAGVEKVSDLQPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGEVVKVKVVDVDVERQRI GLSLRLNDDAAPKERGARGGQQRGGQNRANQNRGGQNRANQNRGGQNRGGQDRGQRGGAAPAGSMADALRKAGFGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 61 |
